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Molecular Pharmacology, Vol 15, 322-330, Copyright © 1979 by the American Society for Pharmacology and Experimental Therapeutics

Efficiency of Photolytic Binding of Ethidium Monoazide to Nucleic Acids and Synthetic Polynucleotides

CHARLES E. CANTRELL 1, K. LEMONE YIELDING 1, and KENNETH M. PRUITT 1

1 Laboratory of Molecular Biology, University of Alabama in Birmingham, University Station Birmingham, Alabama 35294

Radiolabeled 3-amino-8-azido-5-ethyl-[14C]-6-phenyl phenanthridine (ethidium monoazide) was photolyzed in situ in the presence of calf thymus DNA, RNA, poly A, calf thymus histones and nucleoid structures prepared from lymphocytes. Non-linear least squares analysis of the binding data enabled us to predict the amount of drug adduct formed at infinite polymer concentration. Photolytic efficiency could the be calculated since the input drug concentration was constant and therefore represented the non-covalent complex expected at infinite polymer concentration. The efficiency of photolysis for native, heat-denatured and formaldehyde-denatured DNA was 0.23, 0.26 and 0.45, respectively, and for RNA it was found to be 0.29. The value for poly A was 0.42. The intensity of light was not a limiting factor under the conditions of these experiments.

Submitted on June 2, 1978
Accepted on October 18, 1978




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