![]() |
|
|
Vol. 54, Issue 6, 994-999, December 1998
Molecular Parasitology Laboratory, Indian Institute of Chemical Biology, Calcutta 700 032, India (S.R., B.M., A.D., H.K.M.), and Department of Pharmacy, Jadavpur University, Calcutta 700 032, India (B.H.)
| |
Summary |
|---|
|
|
|---|
Diospyrin is a plant product that has significant inhibitory effect on the growth of Leishmania donovani promastigotes. This compound inhibits the catalytic activity of DNA topoisomerase I of the parasite. Like camptothecin, it induces topoisomerase I mediated DNA cleavage in vitro. Treatment of DNA with diospyrin before addition of topoisomerase I has no effect. Preincubation of topoisomerase I with diospyrin before the addition of DNA in the relaxation reaction increases this inhibition. Our results suggest that this bis-naphthoquinone compound exerts its inhibitory effect by binding with the enzyme and stabilizing the topoisomerase I-DNA "cleavable complex." Diospyrin is a specific inhibitor of the parasitic topoisomerase I. It does not inhibit type II topoisomerase of L. donovani and requires much higher concentrations to inhibit type I topoisomerase of calf thymus. The potent inhibitory effect of diospyrin on type I DNA topoisomerase from L. donovani can be exploited for rational drug design in human leishmaniasis.
| |
Introduction |
|---|
|
|
|---|
Leishmaniasis
presents as a spectrum of diseases, ranging from benign cutaneous
lesions through metastasizing mucocutaneous forms to the often fatal
visceralizing form (Walton, 1987
). Current therapies are inadequate.
The pentavalent antimonials sodium stibogluconate and meglumine
antimonate, the first line of drugs for visceral and cutaneous
leishmaniasis, have variable efficacy and side effects (Thakur et
al., 1988
). The second line of drugs, amphotericin B and
pentamidines, although used clinically, are often of limited efficacy
and are very toxic (Iwu et al., 1994
). Therefore, improved drug therapy of leishmanial infections is still desirable and the need
for new molecular targets on which to base future treatment strategies
is clear and justified.
Currently DNA topoisomerases have been recognized as potential
chemotherapeutic targets for antitumor and antiparasitic agents (Chakraborty and Majumder, 1988
; Liu, 1989
; Burri et al.,
1996
). DNA topoisomerases are ubiquitous enzymes that control many
vital cellular processes by making reversible DNA breaks, enabling a specific tyrosyl residue in the enzyme to covalently link to the phosphoryl group at the DNA break via a phosphodiester bond. They have
been classified into two types. The type I enzymes make a transient
single stranded nick in absence of any high energy cofactor, whereas
the type II enzymes make double-stranded breaks in the presence of ATP,
which allows supercoils to be removed from the circular DNAs. Both
types of enzymes have been characterized in kinetoplastid
hemoflagellated protozoan parasites (Riou, 1983
; Chakraborty and
Majumder, 1987
; Melendy and Ray, 1987
; Chakraborty and Majumder, 1991
;
Chakraborty et al., 1993
). It has been suggested that
topoisomerase I targeting agents may have broad spectrum antiprotozoal
activity (Bodley et al., 1995
). Our own studies have
indicated that leishmanial DNA topoisomerases may well provide suitable
targets for potential chemotherapy of antileishmanial drugs
(Chakraborty and Majumder, 1988
; Ray et al., 1996
; Ray et al., 1997
).
Inhibitors of DNA topoisomerases comprise a variety of
structurally diverse compounds that interfere with the nicking-closing activities catalyzed by the enzymes. Clinically active antitumor drugs
include inhibitors of topoisomerases, such as camptothecin and three of
its water soluble derivatives (Slichenmeyer et al., 1993
),
and inhibitors of topoisomerase II, such as acridines, anthracyclines,
ellipticines, epipodophyllotoxins, and quinolones, etc. (Liu, 1989
).
Some of these antitumor drugs (e.g., camptothecin, ellipticin,
etoposides) also inhibit trypanosomal topoisomerases (Shapiro and
Englund, 1990
; Bodley and Shapiro, 1995
).
In the present study, we describe the plant-derived bisnaphthoquinonoid
compound diospyrin (Fig. 1). Diospyrin is
an antitumor compound (Hazra et al., 1984
) capable of
inhibiting the growth of Leishmania donovani promastigotes
(Yardley et al., 1996
). It also inhibits the growth of
Trypanosoma brucei, Trypanosoma cruzi (Yardley
et al., 1996
), and Plasmodium falciparum (Hazra
et al., 1995
) in vitro. We have shown here that
it is a potent inhibitor of type I DNA topoisomerase of L.
donovani; like camptothecin, it also induces
stabilization of the "cleavable complex" mediated by topoisomerase
I. These observations suggest an important clinical application of the
compound, making the present studies highly relevant. There are several
naphthoquinones that have been reported to have inhibitory
activities toward eukaryotic topoisomerases (Fujii et al.,
1992
; Li et al., 1993
). This is the first report of a
dimeric naphthoquinone acting as a potent inhibitor of type I DNA
topoisomerase of L. donovani.
|
| |
Materials and Methods |
|---|
|
|
|---|
Isolation of diospyrin.
Diospyrin was isolated from the stem
bark of Diospyros montana Roxb. as described previously
(Hazra et"" al., 1984). The purity of the compound was
attained by repeated crystalization from chloroform [m.p., 270°
(d)] and confirmed by the appearance of a single spot in thin layer
chromatography [Adsorbent-silica gel G, thin layer chromatography
grade (Merck, Mumbai, India); developer, petroleum ether (b.p.
60-80°): ethyl acetate, 4:1 (v/v); indicator, iodine; Rf = 0.54] and recording of a single
molecular ion peak (M+374) in the mass spectrometry. The structure of
the compound was ascertained by analytical and spectroscopic methods
(Hazra et al., 1995
) and confirmed by superimposable IR
spectra and undepressed mixed melting point wth
an authentic sample of diospyrin. Diospyrin solution was made in 100% DMSO.
Parasite culture and growth conditions.
L.
donovani strain UR6 promastigotes (MHOM/IN/1978/UR6) were
grown in Ray's modified media (Ray, 1932
) and subcultured at 72-hr intervals.
Enzymes, DNA, and chemicals.
Type I and type II DNA
topoisomerases were purified from L. donovani
strain UR6 promastigotes as described previously (Chakraborty and
Majumder, 1987
; Chakraborty et al., 1993
). Calf thymus
topoisomerase I was purchased from Life Technologies (Gaithersburg,
MD). Plasmid pGEM4Z DNA was purchased from Promega (Madison, WI) and
plasmid pHOT1 DNA was purchased from TopoGEN (Columbus, OH). pHOT1 DNA contains the high affinity topoisomerase I cleavage site (Bonven et al., 1985
) that is derived from the tetrahymena ribosomal
gene repeat (hexadecameric sequence). kDNA was purified from
L. donovani strain UR6 as described by Dasgupta
et al. (1986)
. Camptothecin (lactone form) and etoposide
were obtained from Sigma (St. Louis, MO). Camptothecin was dissolved in
DMSO and etoposide in 50% DMSO at 10 mM concentrations.
Drug solutions were kept frozen at
20°. Further dilutions were made
in distilled water immediately before use. Final DMSO concentrations
never exceeded 2%, and all control experiments were carried out with
equal volume of drug solvent.
Enzyme assay. The type I DNA topoisomerase was assayed by decreased mobility in an agarose gel of supercoiled pGEM4Z after treatment with the enzyme. The standard topoisomerase I assay mixture (25 µl) contained: 25 mM Tris·HCl, pH 7.5, 5% glycerol, 50 mM KCl, 0.5 mM DTT, 10 mM MgCl2, 30 µg/ml bovine serum albumin, 0.5 µg of pGEM4Z, and 1 unit of enzyme (one unit of topoisomerase I activity is the amount of enzyme that converts 0.5 µg of superhelical DNA to the relaxed state under the condition of assay). The reaction was carried out at 37° for 30 min. Reactions were stopped by adding 1% SDS, 10 mM EDTA, 0.25 µg/ml bromphenol blue, and 15% glycerol. Samples were applied to a horizontal 1% agarose gel and subjected to electrophoresis in Tris-acetate/EDTA buffer (0.04 M Tris-acetate, 0.002 M EDTA, pH 8.0) at 1.5 V/cm for 14-16 hr at room temperature. The gels were stained with ethidium bromide (5 µg/ml), destained in water, and photographed under UV illumination. Percent relaxation was measured by microdensitometry of negative photographs of supercoiled monomer DNA band fluorescence after ethidium bromide staining with a microdensitometer (LKB BROMMA 2202 Ultrascan) and the area under the peak calculated. The standard decatenation assay mixture (25 µl) contained: 25 mM Tris·HCl, pH 7.9, 10 mM MgCl2, 0.1 mM EDTA, 1 mM DTT, 50 mM NaCl, 10% glycerol, 0.2 µg of kDNA from L. donovani strain UR6 and 1 unit of enzyme (1 unit of enzyme activity is defined as the amount of enzyme needed for 50% decatenation of 0.2 µg of kDNA networks into minicircles). The reaction was carried out at 30° for 30 min. Decatenations were monitored in 1% agarose gel as described above. Calf thymus DNA topoisomerase I was assayed according to the conditions specified by the manufacturer.
Topoisomerase I cleavage assay.
Reaction mixtures (50 µl)
containing 50 mM PIPES, pH 6.0, 100 mM KCl, 10 mM MgCl2, 0.5 mM DTT, 0.5 mM EDTA, 30 µg/ml bovine serum albumin, 5 µg/ml of
pHOT1 DNA, 80 units of topoisomerase I enzyme, and drugs were incubated
at 37° for 30 min (Hsiang et al., 1985
). The reactions
were terminated by adding 1% SDS and 150 µg/ml proteinase K. After
the additional 1 hr incubation at 37°, DNA samples were
electrophoresed in 1% agarose gel containing 0.5 µg/ml ethidium bromide.
| |
Results |
|---|
|
|
|---|
Catalytic inhibition of topoisomerase I by diospyrin.
Topoisomerase I was assayed by the method described previously by
Chakraborty et al. (1993)
(i.e., the relaxation of
supercoiled DNA in a Mg+2-dependent,
ATP-independent reaction). While studying the in vitro effect of diospyrin on L. donovani
topoisomerase I, we found that the compound, when added together with
DNA and enzyme, inhibited relaxation at 1 µg/ml and more strongly at
higher concentrations (Fig. 2A,
lanes 1-6). Lane 8 shows the relaxation of
supercoiled pGEM4Z (lane 7) by 2 units of purified
topoisomerase I of L. donovani. Complete
inhibition of DNA relaxation activity takes place at 15 µg/ml
concentration of diospyrin (lane 5). Inhibition of enzyme activity is more predominant when the enzyme is preincubated with the
compound for 5 min at 37° in the relaxation assay mixture before
addition of the DNA substrate. Fig. 2B shows the inhibition of
catalytic activity by diospyrin in the above reaction condition. Lane 4 shows that the compound exerts 50% inhibition only
at 0.5 µg/ml concentration. The inhibition by the compound occurs in a highly dose-dependent manner. Densitometric analysis of the agarose
gel shows that when the enzyme, DNA, and diospyrin were added
simultaneously in the standard relaxation assay mixture, 10%
inhibition was found at 1 µg/ml concentration. However, at this
concentration, 80% inhibition was found when the enzyme was preincubated with diospyrin before addition of the supercoiled DNA
substrate (Fig. 2C).
|
Diospyrin is acting reversibly against the enzyme. Because diospyrin inhibits the catalytic activity of DNA topoisomerase I of L. donovani, the most important issue is to understand the mechanism of inhibition. It is not clear whether diospyrin is acting reversibly or irreversibly against the enzyme. This critical matter has been sorted out in two ways. In the first experiment, based on the dose response data shown in Fig. 2 one unit of enzyme was preincubated with three different concentrations of diospyrin for 5 min at 37°. After preincubations, supercoiled pGEM4Z DNA was added to each reactions and further incubated at 37° for different times. Fig. 3 shows the time course of inhibitions. Preincubations at noninhibitory (0.1 µg/ml) and inhibitory concentrations (1 and 10 µg/ml) of diospyrin followed by incubations with DNA for different times reveal that diospyrin-mediated inhibition of relaxation is relieved with time. It may be noted here that at 0 min, at all the three concentrations of diospyrin, there is no relaxation of supercoiled DNA (Fig. 3A, lane 3; Fig. 3B, lanes 3 and 8) as in 0 min the catalytic action of topoisomerase I on the supercoiled DNA substrate has not started. Hence incubation for 0 min is also another experimental control. At 0.1 µg/ml of the compound, there is hardly any inhibition of catalytic activity of topoisomerase I (Fig. 3A). At 1 and 10 µg/ml of the compound, the corresponding relief of inhibitions are 55% and 35%, respectively, after 30 min of incubations (Fig. 3, B and C). The nature of inhibition and its relief followed similar kinetics when diospyrin was used at inhibitory concentrations (Fig. 3C). In the second experiment, topoisomerase I was preincubated with 1 µg/ml of diospyrin, an inhibitory dose (Fig. 4, lane 5) as above, and then diluted by 2- and 5-fold, respectively (lanes 6 and 7). Drug control reactions showed the expected pattern of inhibition (lanes 3 and 4). Dilution from an inhibitory dose (1 µg/ml) to a noninhibitory dose (0.2 µg/ml) resulted in a relief of inhibition (lane 7). Taken together, these results indicate that diospyrin is acting reversibly against topoisomerase I.
|
|
Diospyrin is more effective on L. donovani topoisomerase I. To understand whether diospyrin exerts its specific inhibitory effect on type I DNA topoisomerase of L. donovani, relaxation reaction by calf thymus topoisomerase I and decatenation reaction by L. donovani topoisomerase II were carried out in presence of the compound. Fig. 5 shows the inhibition of relaxation of supercoiled plasmid pGEM4Z DNA by calf thymus topoisomerase I in presence of diospyrin. Diospyrin is more effective on L. donovani topoisomerase I, because the compound requires much higher concentration (i.e., 50 µg/ml to significantly inhibit calf thymus topoisomerase I compared with the inhibition of L. donovani enzyme, which is achieved only at 5 µg/ml concentration.
|
Diospyrin does not inhibit type II topoisomerase. Diospyrin selectively inhibits topoisomerase I and does not inhibit topoisomerase II of L. donovani, as determined by decatenation of L. donovani kDNA, which contains a large network of interlocked, 830-bp catenated DNA circles, the minicircles. The decatenation assay is a highly specific assay for type II topoisomerases. Fig. 6, lane 2, shows the decatenation of kDNA (lane 1) by L. donovani topoisomerase II. Lanes 3-6 refer to the decatenation in presence of 5, 25, 50, and 100 µg/ml of diospyrin; lanes 7-10 refer to the decatenation of kDNA in presence of 3, 15, 30 and 75 µg/ml of etoposide. Etoposide is a known topoisomerase II inhibitor. It also inhibits decatenating activity of type II topoisomerase of L. donovani and does so with greater potency at higher concentrations. Diospyrin does not show any inhibition of topoisomerase II of L. donovani at concentrations up to 50 µg/ml, which is 10 times higher than the concentration that inhibited topoisomerase I of L. donovani. Preincubation of topoisomerase II with diospyrin is also without effect on the decatenating activity of the enzyme (data not shown).
|
Diospyrin induces topoisomerase I mediated DNA cleavage.
Topoisomerase I introduces a single-strand nick in the phosphodiester
bond of the DNA, allows an intact strand to pass through the nick, and
then rejoins the nicked strand of the DNA. A covalent bond is formed
between the 3'-OH group of the DNA backbone and the tyrosine group at
the active site of topoisomerase I. This covalent enzyme DNA complex is
the putative reaction intermediate termed the `cleavable complex,'
which can be detected when the reaction is terminated with a strong
detergent such as SDS or alkali. Camptothecin is an established
antitumor drug and a well-characterized inhibitor of eukaryotic
topoisomerase I. Camptothecin has been shown to stabilize the cleavable
complex, which is probably the mechanism of its enzymatic inhibition
(Slichenmeyer et al., 1993
). To understand the mechanism of
diospyrin inhibition, we investigated the effect of diospyrin on the
cleavable complex formation between the L.
donovani topoisomerase I and pHOT1 DNA. With increasing concentrations of camptothecin, closed circular pHOT1 DNA (form I) was
converted to nicked circular DNA (form II). Fig.
7A, lanes 3-6, show the
cleavage of supercoiled pHOT1 DNA (lane 1) in presence of 80 units of L. donovani topoisomerase I (lane
2) and the same amount of enzyme plus 5, 10, 20, and 30 µM camptothecin. When the cleavage reaction was carried
out with increasing concentrations of diospyrin, closed circular pHOT1
DNA was also converted to nicked circular DNA. Fig. 7B, lanes
5-7, shows the cleavage of supercoiled pHOT1 DNA (lane
1) in presence of 80 units of topoisomerase I (lane 3),
and the same amount of enzyme plus 5, 10, and 20 µg/ml of diospyrin.
The gradual increase of nicked form II DNA (lanes 5-7)
indicates that diospyrin stabilizes the "cleavable complex" in a
dose dependent manner. Lane 4 is same as lane 3 but in presence of 10 µM camptothecin. Lane 2 shows relaxation of pHOT1 DNA
with 80 units of topoisomerase I, but without SDS and proteinase K treatment. There is a marked increase in the formation of nicked product when the covalent complex was trapped with SDS and proteinase K
(lane 3) compared with untrapped reaction (lane
2) and control DNA (lane 1). In this experiment,
ethidium bromide (0.5 µg/ml) was included in the gel and
electrophoresis buffer to resolve the more slowly migrating nicked
product (form II) from covalently closed relaxed molecules (form
Ir). These results suggest that diospyrin exerts
its inhibitory action on L. donovani
topoisomerase I by a different mechanism. Unlike camptothecin, there is
a direct interaction between diospyrin and the enzyme; like
camptothecin, however, it stabilizes the topoisomerase I-DNA covalent
binary complex.
|
| |
Discussion |
|---|
|
|
|---|
The bisnaphthoquinone compound diospyrin and its derivatives have
been found to have antitumor properties against Ehrlich ascites
carcinoma (Hazra et al., 1984
) and sarcoma 180 (Hazra et al., 1994
) and exhibit antiprotozoal activities toward
L. donovani, T. brucei,
T. cruzi (Yardley et al., 1996
) and
P. falciparum in vitro (Hazra et al.,
1995
). Our studies suggest that diospyrin exerts its action by
interacting with type I DNA topoisomerase of leishmania and stabilizing
the "cleavable complex". The inhibition by diospyrin is relatively
specific as the compound requires 10-fold higher concentrations to
inhibit DNA topoisomerase I from calf thymus and it does not inhibit
DNA topoisomerase II of L. donovani at this concentration.
Diospyrin is similar to
-lapachone, a naphthoquinone and also a
novel inhibitor of type I DNA topoisomerase (Li et al.,
1993
) with respect to its binding with the enzyme and inhibition of catalytic activity of the enzyme. However, unlike
-lapachone, it
also induces the formation of a stable cleavable complex.
In contrast with topoisomerase II, there are few specific inhibitors of
topoisomerase I-mediated DNA relaxation (Fang et al., 1993
);
camptothecins are the only agents that are known to specifically stabilize the topoisomerase I-DNA covalent binary complex without binding to the enzyme or DNA alone (Hsiang et al., 1985
).
Camptothecin binds to a site that is created when topoisomerase I is
covalently bound to specific sequences of DNA.
Recently developed topoisomerase inhibitors are either natural products
or are derivatives of natural products; several of these compounds are
effective antitumor and antibacterial agents (Drlica and Franco, 1988
;
D'Arpa and Liu, 1989
). Consequently, there is a lot of interest in
discovering novel topoisomerase poisons from natural sources as
potential lead compounds for drug development. Therefore, as a part of
a continuing search for novel topoisomerase I inhibitors, we
investigated diospyrin, which has significant inhibitory effect on the
growth of L. donovani promastigotes. Our results
suggest that diospyrin is a novel inhibitor of type I DNA topoisomerase
of L. donovani. Like camptothecin, a class I
inhibitor, it also stabilizes the cleavable complex. However it differs
from camptothecin with respect to its mode of action. Camptothecin does
not bind with the enzyme alone, but diospyrin does; this interaction is
reversible. Topoisomerase inhibitors fall into two general classes:
those that stimulate formation of enzyme-DNA covalent complexes, termed
as topoisomerase poisons, and those that interfere with this covalent
intermediate (Wang, 1994
). The experimental results suggest that the
compound may belong to the former class. Simultaneous incubation of
large molar excess of enzyme, DNA, and diospyrin at inhibitory
concentrations (5 µg/ml and above) leads to stabilization of
enzyme-DNA covalent complex. Therefore diospyrin is a novel
"topoisomerase I poison." Plant metabolites like plumbagin and
shikonin (Fujii et al., 1992
), which have naphthoquinone
structure, induce mammalian topoisomerase II-mediated DNA cleavage
in vitro. On the other hand, lawson and lapachol, which also
have naphthoquinone moieties, could not induce topoisomerase II
mediated DNA cleavage (Fujii et al., 1992
). This is the
first example of a bisnaphthoquinone compound acting as a topoisomerase
I inhibitor. The finding that L. donovani
topoisomerase I is more susceptible to this compound than other
eukaryotic topoisomerases may be exploited in developing rational
approaches to chemotherapy of Leishmaniasis.
| |
Footnotes |
|---|
Received March 2, 1998; Accepted August 31, 1998
1 Current affiliation: Department of Pharmacology, University of Texas South Western Medical Center at Dallas, Dallas, TX 75235.
This work was supported by grants from Department of Biotechnology, Government of India (BT/R&D/15/26/91 and BT/PRO/493/MED/09/096/96) to H.K.M. and University Grants Commission, India and International Foundation for Science, Sweden (Grant No. 1836/F-2) to B.H.
Send reprint requests to: Dr. Hemanta K. Majumder,
Molecular Parasitology Laboratory, Indian Institute of Chemical
Biology, 4, Raja S.C. Mullick Road, Calcutta
700 032. E-mail:
iichbio{at}giascl01.vsnl.net.in
| |
Abbreviations |
|---|
DMSO, dimethyl sulfoxide; SDS, sodium dodecyl sulfate; PIPES, piperazine-N,N'-bis [2-ethane sulfonic acid]; DTT, dithiothreitol, kDNA, kinetoplast DNA.
| |
References |
|---|
|
|
|---|
-Lapachone, a novel DNA topoisomerase I inhibitor with a mode of action different from camptothecin.
J Biol Chem
268:
22463-22468This article has been cited by other articles:
![]() |
J. Tazi, N. Bakkour, J. Soret, L. Zekri, B. Hazra, W. Laine, B. Baldeyrou, A. Lansiaux, and C. Bailly Selective Inhibition of Topoisomerase I and Various Steps of Spliceosome Assembly by Diospyrin Derivatives Mol. Pharmacol., April 1, 2005; 67(4): 1186 - 1194. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Das, C. Mandal, A. Dasgupta, T. Sengupta, and H. K. Majumder An insight into the active site of a type I DNA topoisomerase from the kinetoplastid protozoan Leishmania donovani Nucleic Acids Res., February 1, 2002; 30(3): 794 - 802. [Abstract] [Full Text] [PDF] |
||||
![]() |
M.-E. Proulx, A. Desormeaux, J.-F. Marquis, M. Olivier, and M. G. Bergeron Treatment of Visceral Leishmaniasis with Sterically Stabilized Liposomes Containing Camptothecin Antimicrob. Agents Chemother., September 1, 2001; 45(9): 2623 - 2627. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. S. Kaneshiro, D. Sul, and B. Hazra Effects of Atovaquone and Diospyrin-Based Drugs on Ubiquinone Biosynthesis in Pneumocystis carinii Organisms Antimicrob. Agents Chemother., January 1, 2000; 44(1): 14 - 18. [Abstract] [Full Text] |
||||
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||