 |
Introduction |
It
has been postulated that the DNA interstrand cross-link adducts formed
by platinum drugs may contribute to the cytotoxicity of these compounds
(Leng and Brabec, 1994
). In fact, the interstrand cross-links formed in
DNA by cis-diamminedichloroplatinum(II) (cis-DDP)
between guanine residues in opposite strands preferentially inhibit DNA
or RNA polymerases in vitro (Lemaire et al., 1991
; Vrána et al.,
1996
). Moreover, the binding of platinum drugs on DNA may induce
conformational changes of the double helix structure that may be
responsible for the drug activity (Johnson et al., 1989
; Leng and
Brabec, 1994
; Pil and Lippard, 1997
). The secondary structure most
commonly adopted by DNA in vivo is the B-form, which is right-handed;
however, DNA may also adopt other conformations (Cantor, 1981
). Thus, a
new conformational state of the DNA, namely Z-DNA, characterized by a
left-handed conformation of the helix, has been described (Pohl and
Jovin, 1972
; Herbert and Rich, 1996
). It is now well established that
DNA sequences that are in Z conformation or having potential to adopt
the Z-DNA form can be found in biological systems (Nordheim et al.,
1981
; Nordheim and Rich, 1983
; Lancilloti et al., 1987
; Casasnovas et
al., 1989
; Wittig et al., 1991
). Moreover, a possible role for Z-DNA in
gene regulation has also been proposed (Jiménez-Ruíz et
al., 1991
).
Pohl and Jovin showed that at high salt concentration,
poly(dG-dC)·poly(dG-dC) undergoes a cooperative, conformational
transition from the B-DNA form toward the Z-DNA form (Pohl and Jovin,
1972
). Later on, Behe and Felsenfeld noticed that the methylated
polymer poly(dG-m5
dC)·poly(dG-m5dC) also undergoes a
transition from the B form to the Z form, but it does so at lower salt
concentrations (Behe and Felsenfeld, 1981
). Malinge and Leng (1984)
found that binding of the antitumor drug cis-DDP to
poly(dG-m5dC)·poly(dG-m5dC)
in B conformation induces a conformational change toward a distorted
Z-like form and that binding of cis-DDP to the
polynucleotide in Z conformation stabilizes its Z-DNA structure.
Moreover, it has been also observed that a family of
trans-bis(platinum) complexes provokes the B-to-Z transition
in
poly(dG-m5dC)·poly(dG-m5dC)
(Johnson et al., 1992
). In contrast, the clinically ineffective trans-isomer of cis-DDP inhibits B-to-Z
transition in DNA (Peticolas and Thomas, 1985
; Rahmouni et al., 1985
;
Zaludová et al., 1997
).
We have previously reported that the cytotoxic bis(platinum) complex
[Pt2Cl4(diminazene
aceturate)2]Cl4·4H2O
(Pt-berenil) (Fig. 1) induces drastic
changes on DNA secondary structure, leading to a compaction of the
double helix, and that the diminazene aceturate (berenil) ligand
directs the DNA binding of the Pt-berenil drug (González et al.,
1996
, 1997
). We show herein that the interaction between the Pt-berenil
compound and DNA results in the formation of a large number of covalent
interstrand cross-links and that this number is significantly higher
than that caused by cis-DDP-DNA interaction. Our data
indicate, moreover, that the kinetics of DNA interstrand cross-link
formation by Pt-berenil binding is faster than that of
cis-DDP-DNA interaction and that the number of DNA
interstrand cross-links in Pt-berenil-DNA complexes is influenced by
supercoiling. To determine whether the large number of DNA interstrand
cross-links formed by the drug affect the conformational changes of the
double helix, we have analyzed the effect of Pt-berenil binding on the
MgCl2-induced B-DNA-to-Z-DNA transition of
poly(dG-m5dC)·poly(dG-m5dC).
We have chosen this methylated polymer because the dinucleotide sequence "m5dC-dG" appears so frequently in
eukaryotic DNA [it may account for more than half of all "d(CpG)"
sequences (Razin and Riggs, 1980
)]. Moreover, we have chosen
MgCl2 as the Z-DNA inducer because it allows work
at Cl
concentrations close to those found
intracellularly (Rich et al., 1984
). The results show that Pt-berenil
strongly inhibits the salt-induced B-DNA-to-Z-DNA transition of
poly(dG-m5
dC)·poly(dG-m5dC). We think that these results
are interesting in view of the fact that the currently known platinum
drugs, in contrast with Pt-berenil, induce the B-DNA-to-Z-DNA
transition (Malinge and Leng, 1984
; Johnson et al., 1992
;
Zaludová et al., 1997
). Because we also present data here
demonstrating that Pt-berenil is active in cis-DDP-resistant
cells, we propose that other bis(platinum) compounds with structures
similar to Pt-berenil might be designed in the search for new cytotoxic
platinum compounds capable of circumventing cisplatin resistance.
 |
Experimental Procedures |
Materials.
The stock solutions of the cis-DDP,
berenil, and Pt-berenil compounds were prepared to a final
concentration of 1 mg/ml. Pt-berenil was synthesized as described
previously (González et al., 1996
). Cis-DDP was kindly supplied
by Bristol-Myers S.A. (Madrid, Spain). The Pt-berenil and
cis-DDP compounds were dissolved in 10 mM
NaClO4. The drug solutions were freshly prepared
before use.
Calf thymus DNA was purchased from Sigma Chemical Co. (St. Louis,
MO). The pF18 plasmid DNA (2927 base pairs in length) containing a Z-DNA forming sequence (Jiménez-Ruíz et al., 1989
) was
isolated from the Escherichia coli JM83 strain by a
modification of the alkaline lysis method (Maniatis et al., 1989
). The
BamHI restriction enzyme and the Klenow fragment of E
coli DNA polymerase I were obtained from Boehringer Mannheim
(Madrid, Spain). [
-32P]dCTP (10 mCi/ml) was purchased from Amersham International (Madrid, Spain).
Cytotoxicity Assays.
The ovarian carcinoma cell lines A2780,
A2780cisR, CH1, CH1cisR, SKOV-3 and SKOV-3cisR were cultured in
Dulbecco's modified Eagle's medium (DMEM) supplemented with
10% of newborn calf serum together with 2 mM glutamine, 100 units/mL
penicillin, and 100 mg/mL streptomycin at 37°C in an atmosphere of
95% air/5% CO2. A2780cisR, CH1cisR, and
SKOV-3cisR are a sublines of their respective parent lines that have
acquired cisplatin resistance (Kelland et al., 1993
). Cell survival in
compound-treated cultures was analyzed by using a system based on the
tetrazolium compound
3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide, which
is reduced by living cells to yield a soluble formazan product that can
be assayed colorimetrically (Alley et al., 1988
). Cells were plated in
96-well sterile plates, at a density of 104
cells/well in 100 µl of medium and were incubated for 3-4 h. Compounds dissolved in DMEM were added to final concentrations from 0.1 to 100 µM, in a volume of 100 µl/well. Ninety-six hours later, 50 µl of a freshly diluted
3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide solution
(1/5 in culture medium) was added at a concentration of 1 mg/ml into
each well and the plates were incubated for 5 h at 37°C in a
humidified 5% CO2 atmosphere. Cell survival was evaluated by measuring the absorbance at 520 nm, using a Whittaker Microplate Reader 2001. All experiments were made in quadruplicate.
Platination Reactions.
Calf thymus DNA, pF18 DNA, and
poly(dG-m5
dC)·poly(dG-m5dC) at concentrations of 200 µg/ml were incubated with the platinum drugs at
ri = 0.1 in 10 mM NaClO4 at
37°C. At various time periods (10 min, 30 min, 1 h, 2 h,
3 h, 18 h, and 24 h), aliquots of the reaction mixture
were withdrawn and assayed by total X-ray fluorescence (TXRF) for
platinum not bound to DNA (Niemann et al., 1990
; Wobrauschek, 1994
;
González et al., 1996
). The molar ratio of platinum bound to
nucleotides (rb) was calculated by subtracting
the amount of free (unbound) platinum present in the reaction mixture.
In agreement with previously reported data (González et al.,
1996
), it was observed that the kinetics of DNA platination by both
Pt-berenil and cis-DDP were similar and that after 24 h
of incubation, DNA platination reached a plateau because > 95%
of the cis-Pt(II) centers from both Pt-berenil and
cis-DDP were bound to DNA.
DNA Renaturation Experiments.
Sonicated calf thymus DNA
(average length of 500 base pairs) was dissolved in 0.02 × standard saline citrate (150 mM NaCl, 15 mM sodium citrate, pH 7.0) at
a concentration of 20 µg/ml. Aliquots of 1 ml of the calf thymus DNA
solution were modified by the drugs at rb of
0.05. The DNA was melted at 45°C to 95°C. After 2 min at 95°C,
control DNA was allowed to reanneal by decreasing the temperature from
95°C to 12°C above the melting temperature of native DNA (57 ± 0.5°C) at a 1°C/min rate. DNA modified by Pt-berenil or
cis-DDP were exposed to comparable renaturation conditions.
Thus, Pt-berenil-modified DNA or cis-DDP-modified DNA were
allowed to reanneal by decreasing the temperature at a 1°C/min rate
from 95°C to 12°C above the melting temperature of Pt-berenil-DNA
(62 ±0.7°C) or cis-DDP-DNA complexes (55 ± 0.3), respectively. The decrease in chromicity upon renaturation was measured
in a Beckman Acta CIII spectrophotometer attached to a temperature
programmer. The percentage of DNA renaturation was calculated from the
hypochromicity value at 95°C.
Interstrand Cross-Link Assay.
To linearize the pF18 plasmid,
the DNA was digested in 150 mM NaCl with 10 units/µg DNA of
BamHI (unique restriction site in pF18) at 37°C for 4 h. The plasmid DNA was 3'-end labeled by incubation with 2.5 mCi/mg DNA
of [
-32P]dCTP and 1.25 units/µg DNA of the
Klenow fragment of E coli DNA polymerase I for 30 min at
room temperature. The reaction was stopped by heating at 70°C for 5 min. The unincorporated radioactivity was removed by passing the
labeling reaction through a Sephadex G-50 column. The labeled DNA was
precipitated with 0.1 volumes of sodium acetate and 2 volumes of cold
ethanol. Sonicated DNA was added to the eluted solution of the labeled
pF18 DNA to a final DNA concentration of 180 µg/ml. Afterwards, the
DNA, at a concentration of 90 ng/ml, was incubated with the Pt-berenil and cis-DDP drugs in 10 mM NaClO4 at
ri of 0.1 for different periods of incubation.
Then, 10-µl aliquots were removed and the reaction was ended by
addition of an equal volume of the loading dye (90% formamide, 10 mM
EDTA, 0.1% xylene cyanol, and 0.1% bromphenol blue). At each period
of incubation, the Pt bound to DNA (rb) was
monitored by TXRF. The DNA was melted for 10 min at 90°C and chilled
on ice. Agarose gel (1.5%) electrophoresis in denaturing conditions
was carried out at 20 V for 16 h (Maniatis et al., 1989
).
Interstrand cross-link formation was also detected in covalently closed
circular pF18 plasmid DNA (density of supercoiling,
=
0.067).
Supercoiled pF18 plasmid was incubated with Pt-berenil or
cis-DDP under the conditions indicated above and
subsequently linearized with BamHI endonuclease, 3'-end
labeled with [
-32P]dCTP, denatured by heat,
and subjected to agarose gel electrophoresis in denaturing conditions.
The gels were dried and autoradiographed. Band quantification was made
using a Molecular Dynamics model 300A densitometer (Sunnyvale, CA).
Determination of the Cross-Linking Rate.
The number of
cross-links was estimated assuming a Poisson distribution
[(XL/fg =
ln(1
FDS)] (Vos and Hanawalt, 1987
). XL/fg represents the number of cross-links per
fragment. FDS results from dividing the
peak of the integrated area of the double-stranded band by the sum of
the integrated areas of the double-stranded and single-stranded bands.
The (XL/fg)/fragment size ratio gives the number
of cross-links per kilobase pair (kb).
Electron Microscopy of Pt-berenil-pF18 DNA Complexes.
Supercoiled (
=
0.067) or linear pF18 plasmid DNA (2 µg) were
incubated at 37°C in 10 mM NaClO4 with
Pt-berenil at ri = 0.1 until an
rb = 0.05 was achieved. Then, the DNA was
precipitated with 2.5 volumes of cold ethanol and 0.1 volume of 3 M
sodium acetate, pH 4.8. Afterward, the precipitate was washed with 100 µl of 75% ethanol. Sample aliquots of the Pt-berenil-pF18 DNA complexes (DNA concentration = 0.1 µg/ml) were denatured and
extended as a monolayer on an aqueous hypophase according to the method of Sogo and Thoma (1989)
. The DNA interstrand cross-links were visualized in electron micrographs of the denatured supercoiled and
linear DNA samples.
Determination of Platinum Bound to DNA In Vivo.
Culture
plates containing 10 ml of HeLa cells (human cervix carcinoma line) in
DMEM (cell density, 2 × 105 cells/ml) were
preincubated at 37°C for 24 h in an atmosphere of 5%
CO2. Then, 500 µl of culture medium containing
the desired amount of drug to reach a final drug concentration of 35 µM (the IC50 value of Pt-berenil in HeLa cells)
was added to the plates. Subsequently, the plates were incubated for
48 h at 37°C and 5% CO2. Afterward, the
cells were centrifuged at 1500 rpm for 5 min, washed with
phosphate-buffered saline, resuspended in 400 µl of buffer containing
20 mM Tris·HCl, pH 7.5, 2 mM EDTA, and 0.4% Triton X-100, incubated
at 4°C for 15 min, and centrifuged at 12,000 rpm during 15 min in a
Microfuge (Hettich Microfuge, Madrid, Spain). The supernatants
were then treated for 3 h at 37°C with 20 mg/ml of proteinase K
in a buffer containing 150 mM NaCl, 40 mM Tris·HCl, pH 8.0, 40 mM
EDTA, and 1% SDS. Finally, the DNA was extracted with
phenol/chloroform/isoamyl alcohol (25:24:1), precipitated with 2.5 volumes of cold ethanol and 0.1 volumes of 3 M sodium acetate, washed
with 75% ethanol, dried, and resuspended in 1 ml of water. The DNA
content in each sample was measured by UV spectrophotometry at 260 nm.
The platinum bound to DNA was determined by TXRF (Niemann et al., 1990
;
Wobrauschek, 1994
). Experiments were carried out in triplicate.
In Vivo Detection of DNA Modifications Induced by Binding of
Pt-Berenil.
The HeLa cells cultivated and treated with 35 µM
concentrations of the Pt-berenil drug for 24 h were harvested with
trypsin/EDTA and centrifuged. The pellets were treated as described in
the previous section to isolate the DNA. Aliquots (250 µl) of genomic DNA (60 ng/ml of DNA) were digested to completion with
EcoRI. Subsequently, 20-µl aliquots were subjected to 1%
agarose gel electrophoresis during 16 h at 1.5 V/cm and
transferred to a nylon membrane (Amersham). Southern blot detection of
genomic DNA was performed using a [32P]-labeled
18 S ribosomal DNA probe (10 mCi/ml).
CD Spectroscopy.
CD spectra were recorded in a JASCO J-600
spectropolarimeter interfaced to a 486 PC. Measurements were performed
at 37°C using 1-cm path-length cells. Each spectrum represents the
mean of three scans. Aliquots containing 15 µg/ml of
poly(dG-m5
dC)·poly(dG-m5dC) were prepared from the stock
solution. CD spectra were run in a range of wavelength from 220 to 320 nm and at a speed of 50 nm/min. Scans were recorded at 0.4 nm intervals.
Measurements of the salt-induced B-to-Z transition of aliquots of
native poly(dG-m5
dC)·poly(dG-m5dC) dissolved in 10 mM
NaClO4 were carried out by adding the desired amount of concentrated MgCl2 (1 M) to the DNA
solution to reach a final MgCl2 concentration of
1.3 mM or 3 mM. The CD spectrum of the polynucleotide was recorded at
several incubation times. The midpoint times of the salt induced
B-DNA-to-Z DNA transition of the polynucleotide were calculated by
plotting the ellipticity values at 250 nm and 290 nm versus time for
each MgCl2 concentration. The midpoint of the
B-to-Z DNA transition is obtained when the ellipticities at 250 nm and
290 nm reach the same value (Cheng et al., 1983
).
To evaluate the effect of the drugs on the
MgCl2-induced B-to-Z transition of
poly(dG-m5
dC)·poly(dG-m5dC), aliquots of the
polynucleotide were preincubated in 10 mM NaClO4
with Pt-berenil or berenil for 3 h at 37°C to achieve an rb = 0.05. Subsequently,
MgCl2 was added to reach a concentration of 1.3 mM or 3 mM. The CD spectra were recorded at the same temperature for
different time intervals. All the experiments were done in triplicate.
 |
Results |
Cytotoxicity of Pt-Berenil in Cisplatin-Resistant Cells.
We
reported previously that Pt-berenil has a cytotoxic activity in a
micromolar range similar to that of cisplatin against HL-60 and U-937
leukemic cells (González et al., 1996
). In view of these
encouraging results, we have tested the cytotoxicity of Pt-berenil
against an ovarian carcinoma panel, including cells sensitive and
resistant to cis-DDP. Table 1
shows the IC50 values of Pt-berenil and
cis-DDP against A2780, A2780cisR, CH1, CH1cisR, SKOV, and
SKOVcisR tumor cells (Kelland et al., 1993
). It may be observed
that Pt-berenil has a cytotoxic activity similar to that of
cis-DDP in the A2780, CH1, and SOV cisplatin-sensitive cells
(IC50 values for Pt-berenil of 0.20 µM, 0.70 µM, and 0.30 µM, respectively, versus IC50
values for cis-DDP of 0.30 µM, 3.30 µM, and 0.10 µM,
respectively). Interestingly, however, in A2780cisR, CH1cisR, and
SKOVcisR cells, Pt-berenil circumvents the acquired cisplatin
resistance because this compound exhibits IC50
values of 0.70 µM, 0.36 µM, and 10.40 µM, respectively, versus
IC50 values for cis-DDP of 3.30 µM,
0.65 µM, and 39.60 µM, respectively. Thus, the data suggest that
the Pt-berenil complex may be considered to be a potential antitumor
agent, because it has resistance factor indexes (see Table 1) that are
significantly lower than cisplatin against the panel of human ovarian
carcinoma cells tested.
DNA Interstrand Cross-Link Formation by Pt-Berenil.
Previously
reported data indicated that the binding of Pt-berenil to DNA
significantly increases the melting temperature of the double helix
above that produced by the ligand berenil and that the increase is
incubation time-dependent (González et al., 1996
). DNA
renaturation experiments of Pt-berenil-DNA and berenil-DNA complexes
suggested that Pt-berenil might induce covalent DNA interstrand
cross-links because the percentage of DNA renaturation in
Pt-berenil-DNA was much higher than that of berenil-DNA. The rationale
of the experiments was that linked homologous sequences should have, in
solution, renaturation kinetics faster than the same nonlinked
sequences because of a "zippering" effect provided by a nucleation
site for helix formation at the cross-link site. Figure
2 shows that the percentage and kinetics
of reassociation of the DNA of the Pt-berenil-DNA complexes is
significantly higher than that of the control DNA and that of the
berenil-DNA complexes. Because after 25 min of reassociation, the
chromicity of the Pt-berenil-DNA complexes was the same as that of the
native Pt-berenil-DNA complexes, it is likely that most of the DNA of
the complex had renatured and that interstrand nucleation points had
been formed along the DNA. That the nucleation sites of the DNA from
the Pt-berenil-DNA complexes might be caused by stable interstrand
cross-links may be deduced from the fact that the bridging of berenil
to DNA after denaturation of the helix does not affect the
reassociation kinetics. The incubation time of the DNA with the
Pt-berenil drug influences the number of the nucleation points, because
the percentage of DNA reassociation is proportional to the period of
complex formation (data not shown). A similar assay was performed with
the drug cis-DDP, which has been shown to form interstrand
cross-links at a low ratio (Lemaire et al., 1991
). The results obtained
confirmed previous reported data indicating that the number of
interstrand cross-links (potential nucleation sites) caused by
cis-DDP-DNA interaction should be low, because the
percentage and kinetics of DNA reassociation relative to native DNA was
not significantly altered.

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Fig. 2.
Kinetics of DNA renaturation of control DNA ( ),
Pt-berenil-DNA ( ), cis-DDP-DNA ( ), and berenil-DNA
( ) complexes formed at rb = 0.05.
|
|
To have a more direct evidence of the capacity of the Pt-berenil drug
to induce DNA interstrand cross-linking, we compared the intensity of
double-stranded DNA forms versus single-stranded DNA forms after
melting and subsequent electrophoresis in denaturing conditions of
Pt-berenil-DNA complexes and cis-DDP-DNA complexes formed
after various incubation times with the DNA. Figure
3A shows that, as expected, a unique band
on the agarose gel corresponding to the single-stranded DNA form was
obtained when the control pF18 DNA was melted (Fig. 3, lane 2). Because
the DNA of the melted berenil-pF18 DNA complexes migrated also as a
single-stranded DNA band (Fig. 3, lane 13) the berenil ligand must not
induce heat stable DNA interstrand cross-links. The berenil-DNA
electrostatic interactions were most likely destroyed by melting. On
the other hand, DNA bands migrating as double-stranded DNA forms were
detected in the melted Pt-berenil-DNA and cis-DDP-DNA
complexes (Fig. 3, lanes 6 to 12). The ratio of the intensity of the
double-stranded DNA band versus the intensity of the band migrating as
single-stranded DNA increased as the period of incubation of the DNA
with the drug also increased. We interpreted this result in terms of an increase in the number of plasmid DNA molecules having Pt-DNA interstrand cross-links. Because we observed that the kinetics of pF18
DNA platination was similar for both drugs (see legend of Fig. 3A), we
made a comparison of the number of DNA interstrand cross-links formed
by Pt-berenil and cis-DDP. It was observed (Fig. 3B) that
the slope of the regression line obtained varied significantly. Our
calculations indicated that, on the average, there must be 1.98 interstrand cross-links per plasmid molecule in the Pt-berenil
complexes formed after 3 h of incubation (rb = 0.048) in contrast to 0.18 cross-links per plasmid in the
cis-DDP-DNA complexes formed also in 3 h
(rb = 0.047).

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Fig. 3.
A, pattern of single and double stranded DNA bands
after melting of the cis-DDP-pF18 DNA, Pt-berenil-pF18
DNA and berenil-pF18 DNA complexes. The complexes were formed by
incubation of the drugs with the DNA at an ri value of 0.1 for 10 min, 30 min, 1 h, 2 h, and 3 h. (ds, double
stranded form; ss, single stranded forms; Cn, native DNA; Cd,
denaturated DNA; B, berenil). B, cross-linking rates for
cis-DDP-DNA ( ) and Pt-berenil-DNA ( ). The mean
rb values obtained for Pt-berenil at the incubation times
indicated above were 0.005, 0.010, 0.015, 0.030, and 0.048, respectively, and for cis-DDP were 0.002, 0.010, 0.017, 0.036, and 0.047, respectively. The standard deviation in all cases was
<5%.
|
|
To analyze whether the Pt-berenil-induced DNA interstrand cross-link
formation is affected by DNA supercoiling, we also performed agarose
gel electrophoresis in denaturing conditions of covalently close
circular pF18 plasmid DNA (
=
0.067), incubated with the compounds
and subsequently linearized and melted (Fig.
4). We observed that the level of DNA
platination and the number of DNA interstrand cross-links increased
slightly for both drugs, because after 3 h of incubation, the
number of interstrand cross-links per plasmid molecule was 3.75 in
Pt-berenil-DNA complexes (Fig. 4, lane 7; rb = 0.055) and 0.20 in cis-DDP-DNA complexes (Fig. 4, lane 12;
rb = 0.052).

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Fig. 4.
A, pattern of single- and double-stranded DNA bands
after BamHI digestion and subsequent melting of the
cis-DDP-pF18 DNA and Pt-berenil-pF18 DNA formed in
covalently closed circular pF18 DNA ( = 0.067) at ri
values of 0.1 for 10 min, 30 min, 1 h, 2 h, and 3 h.
Lane 1, control unmelted pF18 DNA; lane 2, control melted pF18 DNA;
lanes 3 through 7, cis-DDP-pF18 DNA complexes formed
after 10 min, 30 min, 1 h, 2 h, and 3 h, respectively;
lanes 8 through 12, Pt-berenil-pF18 DNA complexes formed after 10 min,
30 min, 1 h, 2 h, and 3 h, respectively. (dsDNA,
double-stranded pF18 DNA; ss, single-stranded pF18 DNA). The
rb mean values obtained in supercoiled pF18 DNA for
Pt-berenil at the incubation times indicated above were 0.007, 0.014, 0.020, 0.040, and 0.055, respectively, and for cis-DDP
were 0.005, 0.016, 0.021, 0.038, and 0.052, respectively. The standard
deviation in all cases was <5%.
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The Pt-berenil-DNA cross-links were visualized by electron microscopy
(Sogo and Thoma, 1989
). Although on the average a single cross-link was
observed in most of the Pt-berenil-treated linear pF18 plasmids, in
agreement with the calculated presence of 1.98 cross-links per plasmid
as indicated above (Fig 5C), some of the linear fragments presented two cross-links. Multiple bubbles, most
likely corresponding to the presence of various interstrand cross-links, were observed when the supercoiled DNA was treated with
the drug (Fig 5D).

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Fig. 5.
Electron micrographs of linear pF18 DNA (A),
supercoiled pF18 DNA (B) and linear (C) and supercoiled (D) pF18 DNA
incubated with Pt-berenil at rb = 0.05. The supercoiling
density, , of covalently closed circular pF18 DNA was 0.067.
|
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Binding of Pt-Berenil to DNA In Vivo.
The binding of
Pt-berenil and cis-DDP molecules to the DNA in whole cells
was determined by quantification of Pt atoms bound to DNA using TXRF
(Niemann et al., 1990
; Wobrauschek, 1994
). The data indicate that under
the conditions used, the number of Pt-berenil molecules bound to
genomic DNA in Pt-berenil treated HeLa cells was 3-fold higher than the
number of molecules bound to the genomic DNA in the cis-DDP
treated cells. Thus, at a concentration of 35 µM, the drug, 50 µg
of DNA, and 0.016% Pt-berenil was bound to DNA, compared with 0.005%
of cis-DDP. We observed, moreover, that the lower DNA
binding rate of cis-DDP was associated with its slower cell
uptake relative to Pt-berenil since after 48 h of incubation of
the Hela cells with 35 µM, the drugs (equivalent to 2.1 × 1017 drug molecules), 93% of the input
Pt-berenil molecules and 84% of the input cis-DDP
molecules, were transported into the cells (data not shown).
To demonstrate that the Pt-berenil drug binds to DNA in vivo, we
carried out Southern blot experiments in which genomic EcoRI digested DNA extracted from drug-treated and untreated HeLa cells was
hybridized with an 18 S ribosomal DNA probe (Vos and Hanawalt, 1987
). The results of the experiments are shown in Fig.
6. As expected, two DNA bands of
4- and 9.5-kb length were detected when the native genomic DNA from
drug-untreated cells was hybridized to the probe (Fig. 6, lane 1). Also
two bands corresponding to a theoretical length of 3 kb and 6.6 kb
hybridizing with the probe were observed in the DNA from the cells
treated with the Pt-berenil drug. The increase in electrophoretic
mobility of the DNA bands from Pt-berenil-treated cells relative to
control DNA (Fig. 6) suggests that in vivo, Pt-berenil induces DNA
compaction, probably through interstrand cross-link formation.

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Fig. 6.
Hybridization of a 18 S ribosomal DNA probe to
genomic DNA from HeLa cells digested with EcoRI
endonuclease. Lane 1, DNA from nontreated HeLa cells. Lane 2, DNA from
HeLa cells treated with 35 µM Pt-berenil.
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Effect of Pt-Berenil on the MgCl2-Induced B-DNA to
Z-DNA Transition of Poly(dG-m5
dC)·Poly(dG-m5dC).
Table
2 shows the MgCl2
concentrations and the times needed to reach the B-to-Z transition
midpoint (t1/2) of control polynucleotide and of the
polynucleotide modified by Pt-berenil and berenil at rb = 0.05. It may be observed that at an
MgCl2 concentration of 1.3 mM, the B-DNA-to-Z-DNA
transition of
poly(dG-m5dC)·poly(dG-m5dC)
has a midpoint-time of 65 min. Similar results were obtained when the
polynucleotide was modified by berenil, although this drug provoked a
delay of the B-to-Z transition, because the midpoint-time was obtained
after 87 min of incubation with the 1.3 mM MgCl2. Surprisingly, however, when the polynucleotide was modified by Pt-berenil, the B-to-Z transition midpoint was not reached even after
120 min at the same MgCl2 concentration.
Moreover, it is interesting to note that after 5 min of incubation with
3 mM MgCl2, the shape of the CD spectrum of the
polynucleotide modified by Pt-berenil is characteristic of the B
conformation. In contrast, an inversion of the CD spectrum
characteristic of the Z conformation is observed in the polynucleotide
modified by berenil and in control polynucleotide after 5 min of
incubation with 3 mM MgCl2 (Fig. 7).
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TABLE 2
MgCl2 concentrations and the times needed to reach the B-to-Z
transition midpoint (T1/2) of control polynucleotide and that
of the polynucleotide modified by Pt-berenil and berenil at rb = 0.05 after addition of growing concentrations of MgCl2. The
experiments were done in triplicate.
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Fig. 7.
CD spectra of
poly(dG-m5dC)·poly(dG-m5dC) ( ),
poly(dG-m5dC)·poly(dG-m5dC)-Pt-berenil
complexes formed at rb = 0.05 (... ...
...) and
poly(dG-m5dC)·poly(dG-m5dC)-berenil complexes
(---) formed at rb = 0.05 after 5 min of
incubation with 3 mM MgCl2 at 37°C. Ellipticity units are
given in mdeg. (... ... ...) Ellipticity
baseline (at 0).
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Discussion |
We have presented in this article evidence showing the ability of
the cytotoxic compound Pt-berenil to form drug-DNA interstrand cross-links. The kinetics and percentage of reassociation of the DNA
from the Pt-berenil-DNA complexes suggested that the renaturation of
the helix is caused by the existence of a "zippering" effect. Most
probably, Pt-DNA interstrand cross-link adducts were formed at the
"zippering site." This interpretation is consistent with other data
showing that several platinum compounds are also able to form DNA
interstrand adducts (Lemaire et al., 1991
). When we compared the
percentage of renaturation of the DNA from the Pt-berenil-DNA complexes
with that of the DNA from cis-DDP-DNA complexes we observed that the renaturation rate was higher in the Pt-berenil treated DNA
than in the cis-DDP-treated DNA, as an indication that the number of "zippering" points related to interstrand cross-links should be high in the Pt-berenil-treated DNA.
The existence of interstrand cross-links in Pt-berenil-treated DNA was
shown by the presence of double-stranded DNA forms in plasmids treated
with the drug after denaturation. The data revealed that at
rb around 0.05, there is at least one interstrand cross-link per linear pF18 plasmid DNA molecule and that, on the average, the number of DNA interstrand cross-links produced by Pt-berenil is 11 times higher than that of cis-DDP.
Moreover, the data indicate that under our experimental conditions, the number of interstrand cross-links per plasmid molecule produced by
Pt-berenil in supercoiled pF18 DNA is about 2-fold higher than that
produced by the drug in linear DNA (3.75 versus 1.98). On the other
hand, cis-DDP also increases the number of interstrand cross-links in supercoiled pF18 DNA relative to linear pF18 DNA, but to
a much lower extent than Pt-berenil. These results are in agreement
with previously reported data indicating that supercoiling affects the
formation of interstrand adducts by cis-DDP (Vrána et
al., 1996
). A similar phenomenon has been also observed in the binding
to DNA of several other drugs, such as psoralen or ethidium bromide
(Cook et al., 1989
).
Electron micrographs taken from preparations of denatured
Pt-berenil-pF18 DNA complexes confirmed that the intercatenary
interaction of the Pt-berenil drug with the DNA through the
cis-Pt(II) centers is favoured in supercoiled plasmids,
whereas in linear pF18, only one site of cross-link was present in most
of the DNA molecules several sites of cross-linking were visualized in
the supercoiled DNA forms. Thus, because Pt-berenil unwinds the double
helix in supercoiled plasmids (González et al., 1996
), it is
expected to bind more readily to negatively supercoiled DNA.
The CD data show that binding of Pt-berenil to
poly(dG-m5dC)·poly(dG-m5dC)
produces a strong inhibition of the salt-induced B-DNA-to-Z-DNA transition. In fact, when the polynucleotide is modified by the drug at
rb = 0.05, the B-to-Z equilibrium is not reached
under salt conditions (3 mM MgCl2) at which the
native polynucleotide readily adopts the Z-DNA form (Fig. 7; Behe and
Felsenfeld, 1981
; Gonzalez et al., 1998
). Interestingly, the CD data
indicate that the polynucleotide modified by Pt-berenil is in B form
even after 5 min of incubation with this salt concentration. On the
other hand, our CD data indicate that the inhibition of the
B-DNA-to-Z-DNA transition of
poly(dG-5dC)·poly(dG-m5dC)
produced by berenil is much lower than that of Pt-berenil. Because
Pt-berenil forms a high number of DNA interstrand cross-links through
the cis-Pt(II) centers ]in contrast with berenil, which binds electrostatically to DNA (Brown et al., 1990
)[, it is most likely that such a high number of interstrand cross-links may block the
uncoiling of the DNA double helix required to undergo the
B-DNA-to-Z-DNA transition.
The cytotoxicity data reported in this article indicate that Pt-berenil
circumvents resistance to cisplatin in several ovarian tumor cell
lines. It has been postulated that the DNA interstrand cross-links
formed by platinum drugs may contribute to the antitumor activity of
these compounds (Leng and Brabec, 1994
). Therefore, it is tempting to
speculate about the possibility that the ability of Pt-berenil to form
DNA interstrand cross-links may be in part responsible for its
cytotoxic activity in cis-DDP-resistant cells.
In summary, the results presented here support the hypothesis that the
synthesis of platinum compounds having biologically relevant molecules
as ligands might lead to the development of cytotoxic agents active in
cisplatin resistant cells and with potential to form specific types of
DNA adducts.
We thank Bristol-Myers S.A. (Madrid, Spain) for their generous
gift of cis-DDP.
This work was supported by Comisión Interministerial de
Ciencia y Tecnologica Grants BIO-096-0405, SAF-96-0041 and CAM
160/92. The institutional support of Fundación Ramón Areces
is also acknowledged.