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Vol. 57, Issue 2, 401-408, February 2000
-Opioid Receptor
Expression
Department of Pharmacology, University of Minnesota Medical School, Minneapolis, Minnesota.
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Abstract |
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Three mRNA variants are generated from the mouse
-opioid receptor
(KOR) gene. The expression patterns of these KOR mRNA variants in adult
animal tissues and during developmental stages are examined. Furthermore, the biological significance of generating these variants is demonstrated with respect to two post-transcriptional mechanisms, i.e., mRNA stability and translation efficiency. Variants A and B are
both transcribed from promoter 1 of the KOR gene and expressed from
early developmental stages through adult life. Although their sequences
differ only at a 30-nucleotide insertion for variant B, these two
variants are distinct with regard to their expression patterns, mRNA
stability, and translation efficiency. Variant A is expressed
ubiquitously in all the tissues examined and has a longer
t1/2 (12 h), whereas variant B is more
specific to the central nervous system both pre- and postnatally and
has a t1/2 of ~8 h. Variant C is
transcribed from promoter 2 of the KOR gene and is most specifically
expressed, being detected only in the brain stem, spinal cord, and
thalamic/hypothalamic areas of postnatal animals. With regard to
protein translation, variants B and C are significantly more efficient
than variant A. This study provides the evidence for multiple levels of
KOR regulation. The biological implication of the generation of KOR
mRNA variants is discussed.
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Introduction |
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Opiates
exert a wide spectrum of pharmacologic effects, mediated by a family of
G protein-coupled transmembrane receptors called opioid receptors.
Three opioid receptor types, µ,
, and
, are present (Goldstein
and Naidu, 1989
; Loh and Smith, 1990
). The genes of the three opioid
receptors have been cloned, and their expression patterns in animals
have been examined with in situ hybridization, immunohistochemistry,
and ligand binding assays (Rius et al., 1991
; Elde et al., 1995
;
Kieffer, 1995
; Knapp et al., 1995
; Mansour et al., 1995
; Zhu et al.,
1998
). The physiologic roles have only begun to be uncovered from
studying genetically altered animal models (Mattes et al., 1996
;
Sora et al., 1997
; Tian et al., 1997
; Loh et al., 1998
; Simonin et al.,
1998
; Schuller et al., 1999
).
Studies using antibodies, nucleic acid probes, and radioisotope-labeled
ligands reveal different expression patterns of the three opioid
receptors in the brain and spinal areas that are associated with pain
sensation and behavior. Our recent studies in developing animals also
show distinct patterns of expression of the three opioid receptor genes
in embryonic stages, suggesting potential functions of opioid receptors
in early animal development (Chen et al., 1999
). Particularly, the
-opioid receptor (KOR) appears very early during animal development
[embryonic day (E) 9.5]. Consistent with the observation that KOR is
expressed in developing embryos before the formation of the nervous
system, the KOR gene is found to be active in the stem cell
populations of an embryonal carcinoma cell line P19 (Chen et al.,
1999
).
The mouse KOR gene has been isolated in several laboratories, and its
genomic structure has been determined (Liu et al., 1995
). In the P19
cell line model, we have demonstrated the biologic activities of dual
promoters of the mouse KOR gene (Lu et al., 1997
). These two promoters
can potentially generate transcript variants that either contain or
lack exon 1 sequence (Lu et al., 1997
). In addition, our own as well as
other studies (Belkowske et al., 1995
; Lu et al., 1997
), have
demonstrated the presence of another variant using an alternative,
splicing acceptor site at intron 1. As a result of this alternative
splicing, this mRNA variant encodes an additional 30 nucleotides
between exons 1 and 2 (Lu et al., 1997
). Despite the demonstration of
these KOR mRNA variants in mouse brain and cell lines, it remains
elusive as to whether these KOR mRNA variants represent biologically
functional KOR mRNAs and whether they are expressed differentially in
animal tissues. Furthermore, the biologic significance of generating KOR variants is unknown.
To address these questions, we set up experiments, first to examine the expression of these KOR mRNA variants in adult animals as well as during development. Second, we addressed the biological significance of these variants in two post-transcriptional events, mRNA stability and translation efficiency. The results of this study provide the evidence, for the first time, of differential expression of KOR mRNA variants as well as post-transcriptional regulation of KOR expression.
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Materials and Methods |
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Analyses of KOR mRNA Variant Expression.
P19 embryonal
carcinoma cells were maintained as described (Wei and Chang, 1996
). RNA
was isolated from normal adult (body weight 25-30 g) CD1 mouse tissues
and P19 cells using the method of Charron and Drouin (1986)
. To
differentiate the expression of KOR mRNA variants in small tissue
samples such as dissected brain areas, conventional mRNA detection
methods such as Northern blot and RNase protection methods are not
appropriate because of the limit in sensitivity and sample size.
Another method, in situ hybridization, was not chosen, because the
sequence that allowed these variants to be detected differentially are
too short (i.e., 30 nucleotides long). Therefore, reverse transcription polymerase chain reaction (RT-PCR) was used. RT was conducted using
SuperScript II RT (Life Technologies, Grand Island, NY) and primed
with oligo(dT) primers on 2 µg of RNA samples in a total volume of 20 µl. To differentiate between the two variants generated from the
first promoter with alternative splicing that occurred at intron
1, the variant-specific 5' primers were designed according to specific
exon 1/exon 2 junction sequences (Lu et al., 1997
). These two KOR mRNA
variants were called A and B. The 5' primer for variant A is
5'-ATCAGCGATCTGGAGCT-3' and that for variant B (containing
an insertion of 30 nucleotides) is 5'-TCAGCGATCTGGAGCCCC-3' (underlined residues showing the splicing junctions of each species of
mRNA). The sequence of the 5' primer for the third variant (C),
transcribed from the second promoter located in intron 1, is
5'-ACAGGCAAAGTTTGTC-3'. A common 3' primer, 5'-GCAAGGAGCATTCAATGAC-3', was designed according to an exon 4 sequence that is present in all the
three variants. Thus, KOR mRNA variants A, B, and C were amplified as
730 base pair (bp), 760-bp, and 800-bp fragments, respectively. To
establish RT-PCR, the linear ranges of amplification cycles and the PCR
inputs in relation to PCR products were first determined (see
Results). Appropriate dilutions of RT products were each
amplified in a 20 µl PCR using commercially provided buffer with a
reaction cycle of 94°C for 45 s, 55°C for 45 s, and
72°C for 1 min, for a total of 30 cycles. A pair of actin-specific primers (5'-TGGCCTTAGGGTGCAGGG-3'; 5'-GTGGGCCGCTCTAGGCACCA-3') (Rappollee et al., 1989
) were included for 23 cycles in each reaction for internal controls. For all the RT-PCR experiments, a negative control without RT was included. After PCR, 5 µl of each sample was
analyzed on Southern blots using
[
-32P]dCTP-labeled probes prepared from the
mouse KOR cDNA spanning exon I to exon IV and from actin cDNA. Southern
blot analyses were conducted according to the established protocols
(Maniatis et al., 1990
).
In Vitro Transcription/Translation (TNT).
The cDNA of each
KOR mRNA variant was cloned into the PvuII site of pSP73
(Promega, Madison, WI) following the T7 promoter. A control vector was
generated by fusing the 5'-untranslated sequence of luciferase (Luc)
reporter from pGL3 (Promega) to the upstream of the ATG codon of the
KOR coding region, which also was cloned into pSP73 vector at the same
PvuII site. TNT reactions were conducted using the
TNT-coupled reticulocyte lysate reaction system (Promega) at 30°C for
60 min. In each reaction, 0.5 µg of specific KOR cDNA vector and 50 ng of an internal control vector (a cytochrome enzyme CYP26 expression
vector also cloned in pSP73) (Haque and Anreola, 1998
) were used as the
starting material, and [35S]methionine was
added during translation. The condition was established to synthesize
KOR and CYP26 proteins in a linear range. The transcription efficiency
was monitored by examining RNA products in Northern blot analyses. The
translated products from the same amount of KOR mRNA variants were
analyzed on 12% SDS polyacrylamide gels and quantified using a
phosphoimager as described previously. The signal of the KOR protein
was normalized to the internal control CYP signal to obtain a value
representing specific KOR protein expression in each TNT reaction.
Transfection Experiments to Determine Reporter Activities
Representing the Translation Efficiency of 5'-Untranslated Region
(5'-UTR) of KOR Variants.
The 5'-UTR of KOR variants was each
fused to the Luc coding sequence of pGL3 (Promega), followed by the
addition of a thymidine kinase promoter (Wagner et al., 1981
) to its
upstream and an SV40 poly(A) to its downstream, generating reporters
for the different 5'-UTRs of KOR mRNA variants. COS-1 cells were
maintained and transfected with each Luc reporter, together with an
internal control
-galactosidase (lacZ) reporter, as described (Lu et
al., 1997
). Thirty six hours after transfection, Luc activity was
determined and normalized to control and lacZ activity to obtain
the relative Luc unit for each transfected culture.
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Results |
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Differential Expression of KOR mRNA Variants in Animal
Tissues.
Previously, we have demonstrated three KOR mRNA variants
by using RNase protection assay and sequence analyses (Lu et al., 1997
). Variant A is transcribed from promoter 1 and spliced at the
14
position (14 bp upstream from the translation initiation codon ATG).
Variant B is also transcribed from promoter 1, but is spliced at the
44 position, resulting in a mRNA species with a 30-nucleotide
insertion. Variant C is transcribed from promoter 2 located in intron 1 and is initiated at the
93 position (79 bp from intron 1 and 14 bp
from exon 2). To detect the expression of these mRNA species in
different tissues, brain regions, and mouse embryo parts, we have
designed a more sensitive RT-PCR assay that allows small amounts of
tissue samples and low levels of expression to be examined. Using this
RT-PCR approach, all three KOR mRNA variants can be differentiated as
described in Materials and Methods. By using different 5'
primers that span the alternative splicing junctions and a common 3'
primer derived from an exon 4 sequence, variants A and B can be
differentially detected. By using a 5' primer specific to an intron 1 sequence transcribed from promoter 2 and the same 3' primer, variant C
can be detected specifically and differentiated from the other two.
Oligo(dT) primers were used in RT and an exon 4-specific, 3' primer was used in PCR; therefore, only mature mRNA with polyadenylation and
proper splicing can be amplified in the expected sizes of 730, 760, and
800 bp for variants A, B, and C, respectively. For qualitative and
quantitative control of each reaction, actin-specific primers were
included for each sample, and the cycle numbers and PCR inputs for a
linear amplification were determined. Figure 1A shows specific primers and expected
fragments in these RT-PCRs. Figure 1B shows the results of experiments
that determine amplification cycles in a linear range for each KOR
variant and for actin. Figure 1C shows the results of experiments that
demonstrate amplified products of each variant in relation to the
amounts of PCR input. Based on these results, the following experiments
were conducted for a total of 30 cycles for KOR variants and 23 cycles
for actin. One tenth of each RT product was used for PCR. These
conditions allowed each mRNA species to be amplified in a linear range.
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Expression Profile of Each KOR mRNA Variant during Developmental Stages
The total KOR mRNA expression has been detected in early embryos
(E9.5) and in undifferentiated P19 cells in our previous studies (Chen
et al., 1999
). To gain insight into how these KOR mRNA variants are
expressed differentially during prenatal stages, RT-PCR was conducted
using RNA prepared from mouse embryos. Older embryos were dissected
into two portions, the brain (B) and the trunk (T). Figure
3A illustrates a representative Southern
blot analysis from three independent experiments, showing KOR variants and actin expression in embryonic stages. Figure 3, B and C, shows the
results of phosphoimager analysis of variant A and B expression, respectively, normalized to actin signal. The relative expression level
of each sample is determined by arbitrarily setting the level of
variant A expression in E9.5 embryos as the value of 1. Although
variants A and B both are expressed in E9.5 embryos and the brain (B)
and the trunk (T) of E12.5 embryos, their expression patterns begin to
divert in older embryos. Variant A is detected in both brain and trunk
of all embryos examined, but variant B is restricted to the brain of
older embryos. Interestingly, variant C, which is initiated from the
second promoter, is not detected in any of the embryo samples.
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The postnatal profiles of KOR variant expression also was examined in
RT-PCR experiments. Because KOR is expressed primarily in the brain and
spinal cord in adults (Fig. 2), only the whole brain and spinal cord
samples were examined in these experiments. Furthermore, because
variant A is expressed at a much higher level compared with variants B
and C (Fig. 2), the RT products were diluted 5× for amplifying
variants B and C and 20× for amplifying variant A to obtain PCR
products that can be quantified reliably. The data then were corrected
for the dilution factors. The expression level of variant B in
1-week-old postnatal brain was arbitrarily set as the value of 1 to
determine the relative expression levels of all the variants in all the
samples. Three independent experiments were conducted, and one
representative pattern was shown in Fig. 4A. It appears that all three KOR
variants are expressed in both brain and spinal cord at all ages,
starting from postnatal week 1 to 6 months of age. Figure 4, B-D,
shows the results of phosphoimager analyses of relative expression
levels of variants A, B, and C, respectively, during postnatal
development. From these analyses, it is concluded that the expression
of variants A and C is slightly elevated (for ~2-fold) in older
animals; whereas the expression of variant B is relatively constant.
Additionally, variant A is expressed at the highest level in all the
developmental stages; variant C is expressed at the lowest level in
young animals (1-2 weeks old) and gradually levels with variant B in
mature animals.
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Therefore, KOR mRNA variants are expressed differentially during both pre- and postnatal development. Variant C is detected only postnatally, specifically in the brain stem, spinal cord, and thalamic/hypothalamic areas, whereas variants A and B are detected both pre- and postnatally. In mid- to late gestation stages of embryos (older than E12.5), when the CNS is being formed, variant B is detected only in the brain (Fig. 3), consistent with the observation that this variant is detected only in the CNS of adult animals (Fig. 2). Variant A appears to be the most ubiquitous and highly expressed species. It can be detected in all embryo samples and all tissues of adult animals.
mRNA stability of KOR Variants.
To gain insight into the
biologic significance of generating KOR mRNA variants, we first
examined mRNA stability of the two alternatively spliced variants A and
B, which are expressed in cultured cells and are assessable. The
undifferentiated P19 cells expressed both variants constitutively.
Actinomycin D was added to the culture to stop RNA transcription. At
different time points after actinomycin D treatment, RNA was collected
from the cultures and the relative levels of variants A and B were
determined by RT-PCR. Figure 5A shows a
representative Southern blot analysis of these experiments, and Fig. 5B
shows the determination of the t1/2 of
variants A and B from two experiments. At later time points, the
message level was too low to be quantified; nonetheless, data could be
quantified reliably within 20 h. From these graphs, clearly the
decay of variant B is faster than that of variant A, and it is
estimated that variant A has a t1/2 of
~12 h, whereas variant B has a t1/2 of
~8 h. Therefore, it is concluded that KOR variant A is more stable
than variant B in P19 cells.
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Translation Efficiency of KOR Variants.
The three KOR mRNA
variants share the identical protein coding region, yet they differ
dramatically within a short range in their 5'-UTR, starting at the
14
position (from the initiating codon ATG). To compare their translation
efficiency, in vitro TNT and reporter analyses were conducted. We first
generated KOR cDNAs encompassing both the common and unique sequences
of the 5'-UTR of the three mRNA variants. The cloned cDNAs of variants A and B share the same 5'-UTR derived from exon 1 (
477 position relative to the ATG codon according to the genomic sequence, which encodes a 92-bp sequence from exon 1) and a common 14-bp sequence immediately upstream of ATG codon located in exon 2. The only difference between variants A and B is a 30-bp insertion at the
14
position of variant B. The construct of variant C starts at the
93
position relative to the ATG codon, which contains a unique 79-bp
sequence derived from intron 2 (following promoter 2) and the common
14-bp sequence upstream of ATG located in the 5' end of exon 2. Therefore, variant B is identical with A, except for a 30-nucleotide
insertion at the
14 position and variant C is identical with B except
for a unique 49-bp sequence upstream of the alternative splicing site
within intron 1. All the sequences have been confirmed by DNA
sequencing. The three cDNAs were each inserted into the same site of
pSP73 in vitro expression vector following the T7 promoter. Therefore,
transcription of the three cDNAs is under the control of the identical
T7 promoter. For a comparison on the efficiency of the Kozak
sequence, a control vector was generated by fusing the 5'-UTR of a
commercially available Luc reporter, in frame, upstream of the ATG
codon of the KOR coding region. In addition, for all the reactions, two
control steps were taken, one to include an internal translation
control using a well-characterized Cyp26 expression vector (Haque and
Anreola, 1998
) and the second to monitor the quantity and quality of
RNA produced in all the reactions by performing Northern blot analyses on RNAs used in each in vitro translation reaction.
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Discussion |
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This is the first study to demonstrate differential expression of three KOR mRNA variants in animal tissues as well as during developmental stages. Furthermore, the biologic significance of generating mouse KOR mRNA variants is demonstrated, for the first time, at the level of controlling RNA stability and protein translation. Variant A is expressed most ubiquitously in all the tissues examined in both pre- and postnatal developmental stages, whereas variant B is more specific to the CNS both pre- and postnatally. Variant C is most restricted, detected only in brain stem, spinal cord, and thalamic/hypothalamic areas of postnatal animals. The RNA stability is different between variants A and B. Variant A is more stable, with a t1/2 of ~12 h, whereas variant B has a t1/2 of only 8 h. In terms of protein translation, variants B and C are more efficient, approximately twice as efficient as variant A. Table 1 summarizes the potential regulatory mechanisms of the three KOR mRNA variants, as compiled from this and our previous studies.
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Differential KOR mRNA variant expression indicates that in addition to
transcriptional control, post-transcriptional regulation also is
required for proper expression of KOR proteins in different cell types
and at different developmental stages. By using pharmacologic methods,
different KOR subtypes have been detected in various animal tissues
(Kitchen et al., 1990
; Loh and Smith, 1990
; Lawrence and Bidlack,
1992
; Gurwell et al., 1996
; Vonkeman et al., 1996
); however, only one KOR gene has been identified. It is tempting to
speculate that differential distribution of these KOR variants in
different cell types may contribute to the distinct pharmacologic characteristics of KOR subtypes. For example, differences in
translation efficiency and mRNA stability could result in very
different kinetics of KOR protein expression in different cell types.
This would explain the discrepancy between the results of detecting
opioid receptor expression at the level of RNA (such as in situ
hybridization) versus protein (immunohistochemistry or ligand-binding
assays). Regulation at the level of RNA stability allows cells with a
less-active transcription machinery to efficiently maintain a certain
level of messages. For cells expressing messages with a shorter
t1/2, a tighter transcriptional control may
be required. Therefore, variant A, which is expressed most ubiquitously
and has a longer t1/2, is probably for a
more common function, which is widely needed and less regulated. In
contrast, variant B is primarily expressed in the CNS and has a shorter
t1/2, suggesting a specific function of
this variant in the nervous system, which requires an additional level
of regulation. The most specific variant, C, is expressed only in
certain brain regions and is active only postnatally, suggesting that
this variant functions in certain neurons that are born postnatally.
Our previous study (Lu et al., 1997
) detected KOR variant C expression
in early passages of P19 cells. Lately, in later passages of the
culture, variant C could no longer be detected reliably. It is known
that P19 culture represents a heterogeneous population of embryonal
carcinoma cells for which differentiation potential often changes as
cultures are passed. The t1/2 of endogenous
KOR variant C in P19 cells cannot be determined reliably; however,
translation of variants B and C (both CNS-specific) are more efficient
than is variant A (ubiquitous), suggesting that neurons expressing
variants B and C requires a better translation efficiency of KOR mRNAs
and
-receptors may play a more specific role in certain types
of neurons. It will be interesting in the future to examine what kind
of neurons express these variants and how the translation is regulated.
From the expression pattern of the three KOR mRNA variants, it can be concluded that the two KOR promoters are activated in very different patterns, both temporally and spatially. Promoter 1, which controls the transcription of variants A and B, is readily active in early embryos in which neurons are not yet in place. In contrast, promoter 2 becomes active only postnatally and only in restricted brain regions. It is highly possible that promoter 1 is more of a house-keeping promoter and that promoter 2 is neuron-specific. Although the dissected promoter 2 is active in transfection experiments conducted in undifferentiated P19 cells, the endogenous promoter 2, in its natural genomic context, appears to be active only in the mature nervous system, most likely in specific types of neurons, or neuron stem cells, which are born later. Furthermore, in culture systems, variant C is detectable only in early passages of P19 cultures, indicating that promoter 2 is normally suppressed in most cell types. Because promoter 1 is active more ubiquitously, the two variants (A and B), which are transcriptionally controlled by the same promoter (promoter 1), then use the mechanism of alternative splicing for differential regulation. Splicing of variant A occurs widely, whereas splicing of variant B occurs mostly in the CNS. Within the CNS, certain neurons in specific brain stem regions use promoter 2 to generate variant C. In terms of translation, variants B and C, both specific to CNS, are more efficient than is variant A, which is ubiquitous. Therefore, by using three levels of regulation for KOR gene expression, i.e., alternative promoter use, alternative splicing and differential control for translation, animals will be able to very effectively control proper KOR protein expression in different cells. This represents the most efficient way of using a limited amount of genetic material to regulate gene expression. Exactly how the machinery for splicing variants A and B is assembled and what types of cells are capable of generating a specific splicing variant remain interesting questions to be answered.
Because the products of the three KOR mRNA variants appear to be the
same (Fig. 6), the reason for generating these KOR mRNA variants is
probably for differential controls of a proper level of KOR protein
expression in specific cell types. Additionally or alternatively, the
information for the control of RNA transport may be encoded in these
KOR mRNA variants. Recent studies in mRNA transport suggest that
specific information for RNA localization may reside in the primary
sequence of mRNA, recognized by the transport motor containing specific
RNA-binding proteins (Arn and MacDonald, 1998
). In the future, it will
be interesting to examine the localization of these KOR mRNA variants
in specific neurons and whether the unique exon1/2 junction, or the
3'-UTR of the mouse KOR gene contains information for its specific transport.
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Acknowledgment |
|---|
We thank Dr. M. W. Wessendorf for help in dissecting mouse brain.
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Footnotes |
|---|
Received June 3, 1999; Accepted October 19, 1999
This work was supported by Grants DA11190, DA11806, DA70554, and DA00564, and from the National Institute on Drug Abuse, National Institutes of Health.
Send reprint requests to: Dr. Li-Na Wei, Department of Pharmacology, University of Minnesota Medical School, 6-120 Jackson Hall, 321 Church Street S.E., Minneapolis, MN 55455-0217. E-mail: weixx009{at}maroon.tc.umn.edu
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Abbreviations |
|---|
KOR,
-opioid receptor;
RT-PCR, reverse
transcription polymerase chain reaction;
bp, base pair;
TNT, transcription/translation;
Luc, luciferase;
UTR, untranslated region;
CNS, central nervous system.
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