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Vol. 57, Issue 5, 899-905, May 2000
Department of Drug Metabolism and Molecular Toxicology, School of Pharmacy, Tokyo University of Pharmacy and Life Science, Tokyo, Japan
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Abstract |
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Purified recombinant human dihydropyrimidine dehydrogenase (hDPD) was incubated with 14C-labeled (E)-5-(2-bromovinyl)uracil ([14C]BVU) in the presence of NADPH to investigate a possible mechanism in the 18 patient deaths caused by interactions of 5-fluorouracil prodrugs with the new oral antiviral drug, sorivudine. BVU is formed from sorivudine by gut flora and absorbed through intestinal membrane. hDPD, a rate-limiting enzyme for the catabolism of 5-fluorouracil and endogenous pyrimidines in the human, was NADPH dependently radiolabeled and inactivated by [14C]BVU. Two radioactive tryptic fragments, I and II, isolated from radiolabeled hDPD were found by complete amino acid sequencing to originate from a common regional amino acid sequence located at positions 656 (Lys) to 678 (Arg) for I and positions 657 (Ser) to 678 (Arg) for II. However, only Cys671, which should be present in the peptides, was not identified by amino acid sequencing. Mass spectrometric analysis of the tryptic fragments indicated that the sulfhydryl group of Cys671 in the hDPD was modified with 5,6-dihydro-5-(2-bromoethylydenyl)uracil (BEDU), a putative allyl bromide type of reactive molecule, to form a sulfide bond with loss of hydrogen bromide. The Cys671 sulfide bearing the debrominated BEDU had a 5,6-dihydrouracil ring highly strained by the exocyclic double bond at the 5-position, so that it underwent facile hydrolytic ring fission with alkali and heated acid treatments. A new proposal is also made for the amino acid sequence of the pyrimidine-binding domain, including Cys671, of DPD in the human and other species.
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Introduction |
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14C-Labeled
(E)-5-(2-bromovinyl)uracil
([14C]BVU) was demonstrated by us to rapidly
bind covalently to purified rat (Okuda et al., 1997
, 1998
) and human
(Ogura et al., 1998
) dihydropyrimidine dehydrogenases (DPDs) in the
presence of NADPH with concomitant rapid inactivation of their enzyme
activity. The NADPH-dependent irreversible inhibition of DPD was also
demonstrated by Desgranges et al. (1986)
and Porter et al. (1992)
with
unlabeled BVU using the partially purified rat and purified bovine
enzymes, respectively.
DPD is a homodimeric cytosolic protein with a molecular mass of
210 kDa having multiple Fe/S clusters and multiple FAD and FMN as an
electron transfer system. In the presence of NADPH, DPD dihydrogenates
the endogenous pyrimidines, uracil and thymine, and various
5-substituted exogenous pyrimidines, including the anticancer drug
5-fluorouracil (5-FU), for their further catabolism to
-alanine and
-substituted
-alanines (Shiotani and Weber, 1981
; Diasio and
Harris, 1989
; Lu et al., 1993
). In the human (Lu et al., 1992
, 1993
),
rat (Shiotani and Weber, 1981
; Lu et al., 1993
), and mouse (Desgranges
et al., 1986
), hepatic DPD has been demonstrated to be a rate-limiting
enzyme for regulating the tissue levels of 5-FU and the endogenous pyrimidines.
We have been trying to determine a possible mechanism for the acute
deaths of 18 Japanese patients in 1993 that were caused by interactions
between oral 5-FU prodrugs and sorivudine
[1-
-D-arabinofuranosyl-(E)-5-(2-bromovinyl)uracil; SRV], the new oral antiviral drug used in the treatment of herpes zoster. These deaths occurred within 40 days after SRV was approved by
the Japanese government for clinical use (Pharmaceutical Affairs Bureau, 1994
). The patients who died from the drug-drug interaction had
received SRV for the viral disease for only a few days while also
receiving one of the 5-FU prodrugs every day for postsurgical anticancer chemotherapy. SRV caused no appreciable toxic symptom in
patients who were receiving anticancer drugs other than 5-FU or its prodrugs.
SRV orally administered to rats (Nishimoto et al., 1990
) and humans
(Ogiwara et al., 1990
) is decomposed in part by gut flora to generate
BVU, which has no antiviral activity and appears in the plasma via the
liver after being absorbed through intestinal membrane. Our
toxicokinetic study with rats indicated that hepatic DPD activity was
markedly decreased by the oral administration of SRV or BVU and that
5-FU concentrations in the plasma, bone marrow, and intestines were
increased to a lethal level when the 5-FU prodrug tegafur
[5-fluoro-1-(tetrahydro-2-furyl)-uracil], which was
administered to most of the patients, was orally coadministered (Okuda et al., 1997
, 1998
). Therefore, the repeated coadministration of
both drugs led all the rats to death within 10 days, after severe toxic
symptoms such as diarrhea with bloody flux and marked decrease in white
blood cell and platelet counts, as had been reported for the 18 patients who died.
Similar evidence was provided by Desgranges et al. (1986)
for the
marked increase in the plasma 5-FU level in the rat and mouse
successively administered i.p. single doses of
BVU and 5-FU. Potent inactivation of human DPD (hDPD) by SRV was also
demonstrated by Yan et al. (1997)
in the mononuclear cells of
peripheral blood from patients who had herpes zoster and were
repeatedly administered a clinical dose of SRV for 10 days. Our in
vitro study indicated SRV to have no inhibitory effect on rat (Okuda et
al., 1997
, 1998
) and human (Ogura et al., 1998
) DPDs in the presence of
NADPH under the same conditions used for the rapid and complete
inactivation of these enzymes by BVU.
However, nothing is known of the molecular mechanism for the mechanism-based inactivation of hDPD by BVU in the presence of NADPH. In this study, we provide evidence for the molecular mechanism of hDPD inactivation, in which a cysteinyl residue located at position 671 in the pyrimidine-binding domain of the enzyme and 5,6-dihydro-5-(2-bromoethylydenyl)uracil (BEDU), an allyl bromide type of reactive molecule formed from BVU with NADPH in the domain, are involved.
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Experimental Procedures |
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Materials.
Adrenocorticotropin (ACTH) fragment 18-39,
-cyano-4-hydroxycinnamic acid, and NADPH were purchased from Sigma
Chemical Co. (St. Louis, MO). A PD-10 column was purchased from
Amersham Pharmacia Biotech (Uppsala, Sweden), and immobilized
TPCK-treated trypsin (200 U/mg) from Pierce Chemical Co.
(Rockford, IL). [6-14C]5-FU (2.1 MBq/µmol) was purchased from Moravek Biochemicals, Inc. (Brea,
CA). [14C]BVU was prepared as reported
previously (Okuda et al., 1997
). 5-(2-Bromoethyl)uracil (BEU) was
prepared from 5-(2-hydroxyethyl)uracil by a previously described method
(Griengl et al., 1985
). Other reagents used were of analytical grade.
Enzyme Assay.
Recombinant hDPD was purified from
Escherichia coli cytosol as reported previously by Ogura et
al. (1998)
. Enzyme activity of the purified hDPD was assayed using
[6-14C]5-FU as a substrate by a previously
reported method (Okuda et al., 1997
). The purified hDPD had a specific
activity of 645 nmol/mg of protein/min. Inactivation of hDPD by
[14C]BVU and the incorporation of radioactivity
into the enzyme were determined under previously reported conditions
(Ogura et al., 1998
). The inhibition constant
(Ki) for BEU was determined using a Dixon
plot obtained in the zero-order kinetics region of the enzyme reaction.
Data were expressed as means of at least three experiments.
Inactivation of hDPD by [14C]BVU and Tryptic Digestion. Purified hDPD (4 mg) was incubated with [14C]BVU (50 µM; specific radioactivity, 2.0 MBq/µmol) in the presence of NADPH (200 µM) in a final volume of 1 ml of 5 mM potassium phosphate buffer (pH 7.4) containing 2.5 mM MgCl2, 10 mM 2-mercaptoethanol, and 0.1% (w/v) Triton X-100 at 37°C for 1 h. Unreacted [14C]BVU was removed from the radiolabeled hDPD by gel filtration chromatography on a PD-10 column (16- × 50-mm) previously equilibrated in 0.2 M NH4HCO3, and the column effluent containing the radiolabeled hDPD (7.8 kBq/mg of protein) was lyophilized. The lyophilizate was dissolved in 2 ml of 0.5 M Tris-HCl buffer (pH 8.0) containing 2.7 mM EDTA, 6 M guanidine hydrochloride, and 45 mM dithiothreitol. The radiolabeled hDPD was alkylated with 0.5 ml of 0.5 M iodoacetic acid in 0.5 M Tris-HCl buffer (pH 8.0) at room temperature in the dark for 30 min. The alkylated radioactive hDPD was separated by gel filtration on a PD-10 column previously equilibrated in 0.2 M NH4HCO3 and digested with immobilized TPCK-treated trypsin (20 U) in 0.1 ml of 0.2 M NH4HCO3 at 37°C for 12 h. Thereafter, the same number of units of trypsin was added to the mixture three times at intervals of 12 h. After the reaction, the trypsin-coated beads were removed from the mixture by centrifugation at 5000g for 5 min.
Reverse-Phase HPLC of Tryptic Digest.
The tryptic digest of
the alkylated radioactive hDPD was separated by reverse-phase HPLC on
an Inertsil ODS-2 column (4.6- × 250-mm, 5 µm; GL Science, Tokyo,
Japan). The digest was loaded onto the column and eluted at a flow rate
of 1 ml/min with a 0 to 30% (v/v) linear gradient of acetonitrile
(0.33%/min) in water containing 0.1% (v/v) trifluoroacetic acid (TFA)
in the eluant. Radioactive peptides I and II were eluted at retention
times of 60 and 62 min, respectively, from the column used for the
first step of HPLC. For additional purification, the peptides were
separately subjected to the second step of HPLC on a Hi-Pore RP-304
C4 column (4.6- × 250-mm, 5 µm; Bio-Rad
Laboratories, Richmond, CA) eluted at a flow rate of 1 ml/min with a 10 to 20% (v/v) linear gradient of acetonitrile (0.17%/min) in water
containing 0.1% (v/v) TFA in the eluant. Radioactive peptides I and II
were eluted from the Hi-Pore RP column at retention times of 29 and 30 min, respectively. Peptide I was obtained in homogeneous form by the
second step of HPLC. Peptide II was subjected to the third step of HPLC
for purification on the Inertsil ODS-2 column and eluted under the same
conditions used for the first step of HPLC. The elution of the peptides
was monitored by absorbance at 214 nm. Fractions were collected every
minute, and radioactivity was determined by radioluminography with a
BAS 2000 bioimaging analyzer (Fuji Photo Film, Tokyo, Japan) as
reported previously (Baba et al., 1994
).
Amino Acid Sequencing. The purified radiolabeled peptides were sequenced by automated Edman degradation with an Applied Biosystems (Foster City, CA) 477A protein sequencer combined with an Applied Biosystems 120A analyzer. Radioactivity of the column effluent from the analyzer at each cycle was measured by liquid scintillation counting with an Aloka LSC-100 liquid scintillation counter (Tokyo, Japan).
Matrix-Assisted Laser Desorption Ionization Time of Flight
Mass Spectrometry (MALDI-TOF MS).
Molecular weights of
purified radiolabeled peptides I and II were determined by MALDI-TOF MS
with a Voyager Elite TOF mass spectrometer (PerSeptive Biosystems,
Framingham, MA) operated in the reflectron mode. The samples were
crystallized with
-cyano-4-hydroxycinnamic acid [10 mg/ml in 50%
(v/v) acetonitrile, 0.1% (v/v) TFA, water]. All spectra were
externally calibrated with the [M+H]+ ions
using ACTH fragment 18-39 (2465.69) as a standard peptide.
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Results |
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Radiolabeling and Inactivation of hDPD by [14C]BVU in
the Presence of NADPH.
Purified recombinant hDPD was rapidly
radiolabeled and completely inactivated by preincubation with 5 µM
[14C]BVU in the presence of NADPH in a
reciprocal manner (Fig. 1). The
radioactivity incorporated into the enzyme protein was not removed by
washing the enzyme protein from the reaction mixture on a ProBond
nickel-resin column (Invitrogen Co., Carlsbad, CA) as reported
previously (Ogura et al., 1998
). No radiolabeling or inactivation of
hDPD occurred in the absence of NADPH, indicating that a reactive
dihydro-derivative, H2-BVU, formed from BVU with NADPH bound covalently to the enzyme. BEU, an alkyl bromide type of
dihydro-derivative, had no irreversibly inhibitory effect on hDPD at
concentrations up to 50 µM when preincubated in the presence and
absence of NADPH. However, BEU was a potent competitive hDPD inhibitor
with a Ki value of 2.2 µM in the
reduction of 5-FU (Fig. 2).
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Cys671 Unidentified in Radioactive Tryptic Fragments
from hDPD Inactivated by [14C]BVU.
Radioactive
peptides I and II were isolated and purified from a tryptic digest of
radiolabeled and inactivated hDPD (4 mg, 7.8 kBq/mg of protein) by the
second and third steps of HPLC, respectively (Fig.
3). Aqueous acetonitrile containing 0.1%
(v/v) TFA was used for the chromatographic purification of the
radioactive peptides. Complete amino acid sequencing of the purified
tryptic fragments indicated that peptides I and II had N termini of
Lys656 and Ser657,
respectively, and a common C terminus of Arg678
(Table 1). However, in their amino acid
sequences, only Cys671, which would be expected
to be present in the molecularly cloned amino acid sequence of hDPD
(Yokota et al., 1994
), was unidentified. At cycles 16 and 15 for
peptides I and II, respectively, in the automated amino acid sequencing
(Table 1), ~90% of radioactivity of the radiolabeled peptide
(equivalent to 70 and 30 pmol of [14C]BVU for
peptides I and II, respectively) was eluted from the chromatographic
column used for identification of the amino acids.
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MALDI-TOF MS Evidence for Covalent Binding of
H2-BVU to hDPD.
MALDI-TOF MS analysis
indicated that radioactive peptide I from
[14C]BVU-inactivated hDPD showed the major
protonated parent ion signal [M+H]+ at
m/z 2556.40 (signal 1), which corresponded to the
calculated molecular mass of a sulfide formed from
H2-BVU and the peptic moiety of
Lys656 to Arg678, including
the Cys671 unidentified by amino acid sequencing
(Fig. 4). The calculated value of
[M+H]+ for the unmodified peptide I with the
amino acid sequence of Lys656 to
Arg678 derived from hDPD was 2416.49, and the
difference between the modified and unmodified peptides was 139.91, which corresponded to the molecular mass of debrominated
H2-BVU minus one proton from the sulfhydryl group
of Cys671 for the sulfide formation.
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Discussion |
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The mechanism-based inactivation of hDPD by BVU in the presence of NADPH was proved to be caused by covalent binding of the reactive metabolite H2-BVU to the Cys671 residue located in the pyrimidine-binding domain of hDPD. BVU acts as a suicide inhibitor of hDPD.
Location of the pyrimidine-binding domain in the amino acid
sequence of human and porcine DPDs was proposed by Yokota et al. (1994)
through their molecular cloning studies of the enzymes based on
evidence provided by Porter et al. (1991
, 1992
) (Fig. 5). Porter et al. indicated that bovine
DPD was inactivated and radiolabeled by the reactive dihydrogenated
metabolites formed from [6-3H]5-iodouracil (1991)
and [2-14C]5-ethynyluracil (1992) in the
presence of NADPH and also that only the Cys residue located in
radioactive fragments from a common amino acid sequence in the
radiolabeled DPD was modified. Later, a molecular cloning study (Albin
et al., 1996
) showed that bovine DPD was 92% identical with hDPD in
total amino acid sequence and completely identical with hDPD in the
sequence of the pyrimidine-binding domain proposed by Yokota et al.
(1994)
, which contained the only Cys residue as indicated by Porter et
al. (1991
, 1992
). Except for the N-terminal amino acid
sequence including two different amino acid residues, radioactive
peptides I and II isolated from the tryptic digest of hDPD inactivated
by [14C]BVU in the presence of NADPH had the
same sequence,
Ser660-Arg678, as the
peptide from bovine DPD inactivated by
[2-14C]5-ethynyluracil in the presence of NADPH
(Porter et al., 1992
). Yokota et al. (1994)
used this same sequence for
proposing the pyrimidine-binding domain of hDPD excluding its N
terminus Ser660.
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DPDs in four mammalian species, including the rat (Kimura et al.,
1998
), all consist of 1025 amino acid residues counting from the
leading amino acid, Met, and have a completely identical sequence at
positions Ser660 to Gln700,
including Cys671 (Fig. 5). This regional sequence
is more than twice as long toward the C terminus as the
pyrimidine-binding domain proposed by Yokota et al. (1994)
who had only
limited data available at that time (Fig. 5). Based on the currently
available data obtained from the Caenorhabditis elegans gene
(Wilson et al., 1994
) and Drosophila melanogaster mRNA (Van
Gelder et al., 1995
), the long amino acid sequence of the
pyrimidine-binding domain may be shortened to Leu665-Gln686, which
contains one homologous amino acid substitution, Lys, in the worm
instead of Arg at position 678 in mammals.
The local sequence
Leu665-Gln686, proposed by
us as a new pyrimidine-binding domain, contains another Cys residue at
position 684. The Cys684 residue is most unlikely
to react with the dihydrogenated reactive metabolite,
H2-BVU, formed from BVU in the hDPD molecule. No
detectable amount of radioactive fragment containing the
Cys684 was found in the tryptic digest of hDPD
inactivated by [14C]BVU after extensive survey
of the digest by HPLC, followed by amino acid sequence analysis and
MALDI-TOF MS. Therefore, the 5-substituted uracil, BVU, is assumed to
tightly interact through its cyclic
N1-vinyl-N3-acylureido
moiety with a limited number of amino acid residues very near the
Cys671 residue in the three-dimensional structure
of the pyrimidine-binding domain of hDPD and to be reduced with NADPH
to the reactive metabolite, H2-BVU. The
Cys684 in the pyrimidine-binding domain of hDPD
may be distant from the immovable H2-BVU formed
in the enzyme molecule, sterically hindered whether located near
H2-BVU or masked as a disulfide by one of the
other 35 Cys residues of hDPD, so that the sulfhydryl group of
Cys684 cannot be modified with
H2-BVU. N1- or
N3-methyl or alkyl-substituted uracils
have been demonstrated to interact with mouse hepatic cytosolic DPD to
a much lesser extent than uracil and 5-substituted uracils (Naguib et
al., 1989
), strongly suggesting that DPD recognizes uracils with an
unsubstituted acylureido moiety as the best substrates.
Two possible structures are considered with respect to the reactive
metabolite H2-BVU, formed from BVU with NADPH in
hDPD. One is BEU, an alkyl bromide formed by reduction of the side
chain vinyl group of BVU. However, BEU cannot be a candidate, because it had no irreversibly inactivating effect on hDPD, even when preincubated at a high molar concentration (50 µM) with the enzyme. BEU interacted with hDPD and inhibited the enzyme reversibly in a
competitive manner at very low concentrations (Fig. 2). The Ki value for BEU was very low, 2.2 µM, in
the reduction of 5-FU by hDPD. The other H2-BVU
is most likely to be BEDU, an allyl bromide type of reactive molecule
formed by the attack of H
from NADPH to the
6-uracil carbon with a shift of the 5,6-double bond to the exocyclic
position of the side chain, followed by protonation to the 2'-carbon of
the side chain (Fig. 6). BEDU may
instantly form a sulfide bond by reacting as an alkylating agent with
the sulfhydryl group of Cys671 with concomitant
loss of hydrogen bromide. The sulfide bond formation between BEDU and
the sulfhydryl group of Cys671 in hDPD was so
facile that the inactivation and radiolabeling of hDPD by
[14C]BVU could not be retarded by a high
concentration of various thiols, including dithiothreitol (Fig. 1).
Similar evidence for the insufficient effect of dithiothreitol has been
obtained by Porter et al. (1992)
in the mechanism-based inactivation of
bovine DPD by 5-ethynyluracil in the presence of NADPH.
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In addition to amino acid sequencing, MALDI-TOF MS analysis of radiolabeled tryptic fragments from hDPD inactivated by [14C]BVU provided evidence for the modification of Cys671 by the reactive metabolite BEDU (Fig. 4). The major parent mass ion signal 1 of peptide I corresponded to the calculated molecular mass of the sulfide formed by BEDU and the peptide Lys656-Arg678. The minor [M+H]+ signal 2 in the spectrum of peptide I should be assigned as a hydrated molecule of peptide I bearing the debrominated BEDU whose 5,6-dihydrouracil ring is highly strained by the adjacent two sp2 carbons, a carbonyl group and an exocyclic double bond at the 4- and 5-positions, respectively (Fig. 6). Hydrated peptide I was likely to be formed at a slow rate during its separation by HPLC, requiring a long time, at least 30 h under acidic conditions, with 0.1% (v/v) TFA in aqueous acetonitrile used as an eluant. Radioactivity measurement of all the chromatographic fractions took 14 h for each step of HPLC. Intensity of [M+H]+ signal 2 in the mass spectrum was increased slowly when the HPLC eluate containing peptide I was left to stand at room temperature (data not shown). The increase in intensity of signal 2 was accelerated by briefly (10 min) heating the HPLC eluate containing peptide I (Fig. 4B).
We expected that the hydrolytic ring opening of the debrominated BEDU in peptide I could be rapidly and completely accomplished by treatment of peptide I with NaOH rather than by acidic treatment. As expected, minor signal 2 rapidly became the major signal with a concomitant change of major signal 1 to the minor signal in the mass spectrum recorded after a brief (5 min) alkali treatment of peptide I at room temperature (Fig. 4D). However, signal 1 still appeared as an unchanged minor signal in the spectrum even after the alkali treatment was prolonged up to 60 min. Therefore, the remaining minor signal 1 was attributed to an alkali-resistant peptide, probably bearing a uracil ring (debrominated BEU) formed at a minor ratio as a thermodynamically stable isomer by the rearrangement of the exocyclic double bond into the dihydropyrimidine ring of the debrominated BEDU residue (Fig. 6).
By prolonging the heating of the acidic eluate containing peptide
I, evidence was obtained that the ring-opening product had an
,
-unsaturated carboxylic acid moiety. Heat treatment gave a new
mass spectral signal 3 corresponding in mass number to signal 2 plus 1 mol of water (Fig. 4C). The addition of a water molecule to the less
stable ring-opening product is likely to be characteristic of the
,
-unsaturated carboxylic acid moiety of the sulfide, as has been
reported for crotonic acid whose double bond has been demonstrated to
be readily hydrated on heating in diluted mineral acids (Pressman and
Lucas, 1939
) and probably in aqueous TFA with strong acidity comparable
to hydrochloric acid.
Thus, this study provides molecular evidence for the mechanism-based
inactivation of hDPD by BVU derived from SRV, which caused many acute
deaths in patients who were receiving 5-FU prodrugs. The patients were
most likely to become extremely poor 5-FU metabolizers by the
inactivation of hepatic DPD with BVU. Based on the occurrence of the
patient deaths, this study teaches us that administration of 5-FU or
its prodrugs must be avoided in patients whose DPD activity is
genetically very low or deficient, as noted by Tuchman et al. (1985)
and Diasio et al. (1988)
; otherwise patients will suffer from severe
toxic symptoms or die due to extremely high tissue levels of
unmetabolized 5-FU.
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Footnotes |
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Received November 15, 1999; Accepted January 6, 2000
Send reprint requests to: Dr. Tadashi Watabe, Department of Drug Metabolism and Molecular Toxicology, School of Pharmacy, Tokyo University of Pharmacy and Life Science, 1432-1 Horinouchi, Hachioji-shi, Tokyo 192-0392, Japan. E-mail: watabet{at}ps.toyaku.ac.jp
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Abbreviations |
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[14C]BVU, 14C-labeled
(E)-5-(2-bromovinyl)uracil;
BEDU, 5,6-dihydro-5-(2-bromoethylydenyl)uracil;
BEU, 5-(2-bromoethyl)uracil;
DPD, dihydropyrimidine dehydrogenase;
5-FU, 5-fluorouracil;
H2-BVU, dihydro-BVU;
hDPD, human DPD;
MALDI-TOF, matrix-assisted laser desorption ionization time of flight;
MS, mass
spectrometry (or mass spectrometric);
SRV, sorivudine
[1-
-D-arabinofuranosyl-(E)-5-(2-bromovinyl)uracil];
TFA, trifluoroacetic acid;
ACTH, adrenocorticotropin;
TPCK, tosylphenylalanyl chloromethyl ketone.
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References |
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-hydroxybutyric acid; The equilibrium between crotonic acid and
-hydroxybutyric acid in dilute aqueous solution.
J Am Chem Soc
61:
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