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Vol. 60, Issue 6, 1288-1295, December 2001
Department of Cell and Cancer Biology, National Cancer Institute, Bethesda, Maryland (M.S.J., J.B.T.); and Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee (C.W.)
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Abstract |
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Methylation of DNA is associated with gene silencing. DNA methylation
uses S-adenosylmethionine (SAM) as the methyl donor and
the formation of SAM requires a continuous supply of folate from the
extracellular milieu. Low extracellular folate levels are known to
result in induction of expression of the human
folate receptor in
nasopharyngeal epidermoid carcinoma cells. Low folate levels have been
implicated in global activation of gene expression. We have
investigated the impact of lowering the level of extracellular folate
by performing cDNA microarray analysis of global gene expression in
human nasopharyngeal carcinoma KB cells grown in folate-deplete and
folate-replete medium. We found that expression of only eight genes
reproducibly responded to variation of folate levels. Among those,
three were up-regulated and five were down-regulated. Examination of
one gene, H-cadherin, demonstrated down-regulation in response
to folate depletion. Despite the low level of extracellular folate,
there was hypermethylation of H-cadherin 5' sequences. These data
indicate that low extracellular folate positively and negatively
influences the expression levels of a small cohort of genes. The data
suggest that folate deficiency is associated with gene-specific
methylation/demethylation, rather than global DNA demethylation and
transcriptional activation.
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Introduction |
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Folates are essential vitamins.
They participate in various biochemical reactions. The formation of
purine and pyrimidine precursors for DNA and RNA synthesis, for
example, requires folate cofactors (Wagner, 1985
; Kane and Waxman,
1989
; Henderson, 1990
; Antony, 1996
). Deficiency of folate can lead to
serious clinical abnormalities. Megaloblastic anemia is one consequence
of folate deficiency (Davis and Nicol, 1988
). During pregnancy, the
demand for folate increases, and folate deficiency in the mother before conception is thought to result in neural tube defects in the infant
(Davis and Nicol, 1988
). Deficiency in folate has also been implicated
in cervical dysplasia (Butterworth et al., 1992
; Glynn and Albanes,
1994
). The biochemical processes affected by intracellular folate
levels are currently being investigated, because knowledge of these
mechanisms is important in understanding folate deficiency-related disease.
A multigene family of high-affinity folate binding proteins (FBP)
designated the
,
,
folate receptors are thought to be involved in intracellular folate transport (Wagner, 1985
; Kane et al.,
1988
; Henderson, 1990
; Antony, 1996
). In cultured human nasopharyngeal
carcinoma KB cells, expression of the human
folate receptor
(
hFR) is inversely proportional to folate concentrations in the
growth medium. When KB cells are continuously cultured in medium
containing physiological folate concentrations (2-10 nM), the levels
of receptor significantly increase compared with the receptor levels in
cells maintained in standard Dulbecco's modified Eagle's medium
(containing >2000 nM folic acid). This increase is accelerated when KB
cells are passaged in very low folate medium containing <2 nM.
Conversely, the addition of 100 nM 5-methyltetrahydrofolate
(N-5 MTHF) to the growth medium prevents and reverses the
increase in
hFR expression (Kane et al., 1988
).
The mechanism(s) responsible for folate-mediated regulation of
hFR
are unknown. No detectable differences are noted in the organization of
the
hFR gene, or the size of its mRNA (Hsueh and Dolnick,
1993
). However,
hFR protein levels (Kane et al., 1988
) from
folate-deficient or normal KB cells correlate well with mRNA levels
(Sadasivan and Rothenberg, 1989
). Regulation of
hFR gene
expression by extracellular folate may therefore involve
transcriptional and/or posttranscriptional controls. Altered methylation of
hFR gene sequences may represent one
regulatory mechanism involved in folate-mediated regulation of
hFR.
Methylation of DNA is known to be associated with gene silencing.
Folates are directly involved in the formation of
S-adenosylmethionine (SAM), the methyl donor of DNA
methyltransferase (Chiang et al., 1996
). Folate deficiency has been
noted to decrease the levels of intracellular SAM in some systems
(Balaghi and Wagner, 1993
; Miller et al., 1994
), suggesting that folate
levels could influence DNA methylation and gene expression activities.
Furthermore, depletion of intracellular SAM because of methyl
deficiency has been demonstrated in vivo to decrease the overall
methylation of DNA (Wainfan et al., 1989
) and of specific genes
including, c-myc, c-fos, and Ha-ras
(Wu and Santi, 1987
). It has been suggested that demethylation and
enhanced expression of the specific genes examined may represent part
of a process of general demethylation and transcriptional activation in
response to methyl deficiency and lowered levels of intracellular SAM.
In the present study, we evaluated the impact of lowering extracellular folate levels on global gene expression in KB cells. We discovered the mRNA levels of only eight different genes were reproducibly affected by folate deficiency. Of particular interest was H-cadherin, a cell adhesion molecule whose gene expression is thought to be regulated by DNA methylation. H-cadherin mRNA levels were decreased by folate deficiency, and this effect was associated with increased methylation of H-cadherin 5' gene sequences. Thus, a restricted number of genes respond to folate deprivation and the response is not limited to DNA demethylation and enhanced gene expression.
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Materials and Methods |
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Cell Culture. Wild-type human nasopharyngeal epidermoid carcinoma KB cells were obtained from the American Type Culture Collection (Manassas, VA). KB cells were maintained in Dulbecco's modified Eagle's medium with folic acid (folate replete, KB-R) or without folic acid (folate deplete, KB-D) containing L-glutamine, Earl's salts, and 10% fetal bovine serum (Biofluid Inc., Rockville, MD) at 37°C at 5% CO2. Both cell lines were cultured in the same manner, asynchronous and continuously proliferating.
Northern Analysis.
Samples containing 20 µg of total
cellular RNA were resolved on a 1% agarose/0.66 M formaldehyde/0.023
3-(N-morpholino) propansulfonic acid gel. The RNAs were
transferred to a nitrocellulose membrane (Portran; Schleicher and
Schuell, Keene, NH) and then hybridized to a random
32P-labeled
hFR cDNA probe (Promega, Madison, WI).
Western Analysis.
Samples containing 100 µg of total
cellular protein were electrophoresed on a 10% SDS-polyacrylamide gel
and electroblotted onto a nitrocellulose membrane (Portran; Schleicher
and Schuell, Keene, NH). Detection of
hFR was accomplished using
polyclonal rabbit anti-
hFR antibody as described previously (Chung
et al., 1993
).
-actin and
hFR plasmid DNA. The abundance of each
transcript was determined using Molecular Dynamics (Sunnyvale, CA)
PhosphorImager analysis software.
Differential Display. Samples containing 0.25 µg of total RNA were reverse transcribed and PCR amplified with three sets of arbitrary 10 mers using the RNAmap kit (GenHunter Corporation, Brookline, MA). The amplified cDNAs were electrophoresed on 6% DNA sequencing gel and visualized by PhosphorImager.
Microarray Analysis.
Human Oncochip cDNA arrays (National
Cancer Institute Microarray Facility, Bethesda, MD) were manufactured
as described by Eisen and Brown (1999)
. Arrays contained approximately
2200 elements, 2008 of which represented nonredundant named genes. A
complete list of genes is available at http://nciarray.nci.nih.gov.
Briefly, total RNA was combined with 1× Superscript II RT (SSII)
reaction buffer (Invitrogen, Carlsbad, CA), 4 µg of oligo dT,
5 mM dNTP mix, 0.1 mM Cy3 or Cy5 dUTP, 10 mM dithiothreitol, and 20 to
40 units of RNAsin (Promega). The mixture was incubated at 65°C for 5 min and transferred to 42°C. The reaction was initiated by the addition of 400 units of SSII and incubated at 42°C for 25 min. Four
hundred units of SSII were added a second time for 35 min at 42°C.
The reaction was terminated by 50 mM EDTA. Residual RNA was hydrolyzed
by 0.2 M NaOH at 65°C for 60 min. The reaction was cooled to room
temperature and neutralized by one half volume of 1 M Tris-HCL, pH 7.5. Probes were cleaned using Microcon YM-30 spin columns (Amicon, Bedford,
MA) and hybridized to Human Oncochip cDNA arrays at 65°C overnight.
Arrays were washed repeatedly and analyzed using an Avalanche scanner
(Molecular Dynamics) and ArraySuite Microarray Analysis software
package (National Human Genome Research Institute, Bethesda, MD).
Results of the microarray analysis represent a compilation of four
independent experiments: 1) duplicates of Cy3-labeled KB-R and
Cy5-labeled KB-D cDNA, and 2) reciprocal duplicates of Cy5-labeled KB-R
and Cy3-labeled KB-D cDNA.
Real-Time Quantitative RT-PCR.
First strand synthesis
of cDNA was accomplished using the Taqman RT kit (Applied Biosystems,
Foster City, CA). The reaction was inactivated by heating at 95°C for
5 min and diluted 5-fold. Primers for PCR amplification were designed
using Primer Express software (Applied Biosystems). One tenth of the
final RT reaction volume was combined with H-cadherin forward primers
(H-cad1568F, 5'-GCTATGGAAACTTGGGAGTCA-3'; H-cad715F,
5'-TGATGACAGGTGCAGTTGTACATTTA-3') and reverse primers (H-cad1624R,
5'-GCTCCTCAGCCTCTTCAGCTT-3'; H-cad789R, 5'-GTCCCGAATCCACAGTCGTACT-3')
and Sybr Green PCR master mix (Applied Biosystems). PCR amplification
and detection of fluorescence incorporation was done using the ABI
Prism 7700 Sequence Detection System (Applied Biosystems) according to
manufacturer's instructions. The CT parameter is
defined as the fractional cycle number at which the reporter
fluorescence generated by binding of SYBR Green I dye onto
double-stranded DNA passes a fixed threshold above the baseline. The
CT values were determined by Sequence Detection Analysis Software (Applied Biosystems). The relative change in gene
expression was calculated (2
CT) and results
were normalized to
-actin gene expression.
Southern Blot Analysis.
Samples containing 30 µg of
genomic DNA were exhaustively digested with HpaII or
MspI restriction endonucleases. Southern blot analysis was
accomplished as described previously (Ausubel et al., 1997
). DNAs
transferred to nylon membranes were hybridized to a 1700-bp H-cadherin
EST (American Type Culture Collection) labeled with
[
-32P]dCTP and
[
-32P]dGTP by the random primer method
(Promega). HpaII cleavage products (indicated by arrowheads
in Fig. 5B) were quantitated using Scion Image Software (Scion
Corp, Frederick, MD).
Sodium Bisulfite Sequencing.
Modification of genomic DNA
with sodium bisulfite was accomplished according to the methods of
Kawakami et al. (Kawakami et al., 1999
). The methyl-specific primers
used for H-cadherin were designed to amplify fully modified DNA.
(H-cad-MF, 5'-TTGGTTGGCGAGGTAGAGTTTT-3'; H-cad-MR:
5'-ACGCCCGACGACGTTTT-3').
Measurement of SAM and S-Adenosyl
Homocysteine.
KB-R and KB-D cells were washed with cold
phosphate-buffered saline, scraped from the dish, and pelleted. The
pellets were suspended in 400 µl of cold 10% trichloroacetic acid
and centrifuged. The trichloroacetic acid supernatants were used to
measure SAM and S-adenosyl homocysteine (SAH) by a
high-performance liquid chromatography method using two columns to
resolve the respective peaks (Capdevila and Wagner, 1998
).
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Results |
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Folate-Mediated
hFR Gene Expression Is Regulated
at the Level of mRNA Synthesis.
KB cells were continuously
cultured in either low folate (KB-D, containing 2-10 nM folate) or
standard (KB-R, containing 2000 nM folate) growth media. In agreement
with previous reports (McHugh and Cheng, 1979
; Luhrs et al., 1986
; Kane
et al., 1988
), we show that
hFR protein (Fig.
1A) and mRNA (Fig. 1B) levels were
elevated by folate deprivation. Because protein and mRNA levels are
correlated, the folate-mediated increase of
hFR gene
expression may involve transcriptional and/or posttranscriptional
regulation controls. To further investigate this issue, nuclear run-on
assays were performed. Consistent with Western and Northern analyses,
the rate of newly synthesized mRNA also increased approximately 5-fold in KB-D cells, relative to KB-R (Fig. 1C). These results strongly suggest that transcriptional mechanisms are involved in folate-mediated expression of
hFR.
|
Differential Display Analysis of the Influence of Extracellular
Folate Levels on Gene Expression.
The effect of folate
concentrations on the expression of
hFR led us to investigate
whether or not the expression of other genes is influenced by
extracellular folate concentrations. Differential display analysis
(Fig. 2A) detected increased and de novo
expression of several PCR-amplified cDNA fragments (arrows) in KB-D
compared with KB-R cells. The levels of folate may therefore influence regulatory mechanisms common to numerous genes in KB cells. Gene regulation by DNA methylation may represent one such mechanism. Folates
are directly involved in the formation of SAM, the methyl donor of DNA
methyltransferase. N-5 MTHF is the cofactor requirement for
the methylation of homocysteine to generate methionine, the immediate
precursor of SAM (Fig. 2B). The intracellular levels of SAM and its
unmethylated counterpart SAH are thought to be important in regulating
methyl transfer reactions. SAH is reported to be a competitive
inhibitor of bacterial DNA methyltransferases, with respect to SAM (Wu
and Santi, 1987
). Therefore, the amounts of intracellular SAM and SAH
could influence the overall levels of DNA methylation.
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Folate Depletion Alters Intracellular Levels of SAM and SAH.
To examine the effect of folate depletion on intracellular levels of
SAM and SAH, we measured the amounts of SAM and SAH in KB-R and KB-D
cells using a two-column high-performance liquid chromatography method
as described under Experimental Procedures. As expected,
Table 1 shows that SAH levels were almost
2-fold higher in KB-D compared with KB-R cells. The SAM levels
increased by 1.7-fold. This resulted in a SAM/SAH ratio of 10.2 in KB-R versus 7.4 in KB-D cells.
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The
hFR Gene Sequences Do Not Encompass a
Classical CpG Island.
In human cells, the CpG dinucleotide is
normally under-represented. However, within the genome, there are
CpG-rich clusters, called CpG islands, in which the density of CpG
dinucleotides is similar to that of the GpCs, a non-under-represented
dinucleotide (Tykocinski and Max, 1984
). Expression of genes containing
CpG islands within their 5' region is known to be decreased or
completely silenced by methylation of their CpG island (Bird, 1986
). To
test whether or not DNA methylation plays a role in folate-mediated gene expression, we decided to investigate the methylation status of
folate-regulated genes that contain CpG islands. We determined the
frequency of CpG dinucleotides within the
hFR gene
sequences. A CpG/GpC map of the
hFR complete gene
sequence indicates no CpG island (Fig.
3). These results suggest that the
mechanism by which folate regulates
hFR expression may not involve
CpG methylation directly. Perhaps the gene products of other factors that are regulated by folate/DNA methylation influence the expression levels of
hFR.
|
Low Extracellular Folate Both Positively and Negatively Influence
the Levels of Genes Expressed.
The differential display analysis
suggested that extracellular folate levels may have a general influence
on gene expression, including those factors that regulate
hFR. To
test for a global impact of extracellular folate on gene transcription
and to identify the genes regulated, a microarray analysis was
performed using RNA isolated from KB-D and KB-R cells. The mRNA levels
of only eight different genes were altered in a highly reproducible
manner by folate depletion (Table 2).
Three genes were up-regulated and five were down-regulated. We were
interested in H-cadherin, a protein related to the superfamily of cell
adhesion molecules; its expression has been shown to be significantly
reduced in human breast carcinoma cell lines and breast cancer
specimens (Lee, 1996
; Lee et al., 1998
). Furthermore, in human lung
cancer cell lines, loss of H-cadherin expression was accompanied by
hypermethylation at the 5' region of this gene (Sato et al., 1998
). In
contrast to the effect of folate levels on
hFR gene
expression, microarray analysis detected a decrease in H-cadherin mRNA
levels by approximately 2.5-fold in KB-D versus KB-R cells. This result
was confirmed by real time quantitative RT-PCR (Fig.
4) using primer sets targeted to two
different locations (715/789 bp and 1568/1624 bp) within the H-cadherin
open reading frame.
|
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H-Cadherin Contains a 5' CpG Island That Is Differentially
Methylated in KB-D and KB-R Cells.
Because H-cadherin is known to
be down-regulated by DNA methylation in other systems (Sato et al.,
1998
), we wondered whether decreased H-cadherin expression by low
extracellular folate involved hypermethylation of H-cadherin gene
sequences in KB cells. To investigate this issue, we determined whether
methylation of CpG dinucleotides within the 5' region H-cadherin was
increased in KB-D versus KB-R cells. A CpG/GpC map of the H-cadherin
gene indicates the presence of a CpG island that encompasses the first
exon and its immediate 5' sequences (Fig.
5A). Differential methylation of
H-cadherin CpG dinucleotides was examined by the HpaII
methyl-sensitive restriction enzyme, which selectively hydrolyses
nonmethylated DNA sequences, and its isoschizomer MspI,
which cleaves DNA regardless of methylation status. Compared with KB-R
cells, Fig. 5B shows decreased cleavage of H-cadherin sequences by
HpaII in KB-D cells (indicated by the arrowhead). The
intensity of the cleavage product decreased by about 7.4-fold as
determined by Scion Image software.
|
Quantitative Analysis of Methylated CpGs within the H-Cadherin CpG
Island.
To quantitatively access the levels of CpG methylation of
H-cadherin in KB-R and KB-D cells, we performed real-time PCR using methyl-specific primers and sodium bisulfite-treated genomic DNA. As
shown in Fig. 6A, sodium bisulfite
treatment of genomic DNA selectively converts nonmethylated
cytosines to uracil residues, whereas methylated cytosines remain
nonreactive (Rein et al., 1998
). Figure 6B indicates a 40%
increase of H-cadherin CpG methylation in KB-D compared with KB-R
cells. Taken together, these results strongly suggest that decreased
expression of H-cadherin by intracellular folate deficiency is
associated with hypermethylation of the CpG island.
|
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Discussion |
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Regulation of
hFR has been studied extensively in the KB
cell line. KB cells express high levels of the
hFR relative to human
tissue. Previous reports indicate that the concentration of
extracellular folate contributes to the levels of
hFR in these cells. Expression of the
hFR increases (about 5- to 10-fold) when KB cells are maintained in media containing low folate (<10 nM)
compared with cells cultured in standard media (containing 2000 nM
folate) (McHugh and Cheng, 1979
; Luhrs et al., 1986
; Kane et al., 1988
;
Sadasivan and Rothenberg, 1989
). Our results agree. We showed an
increase in
hFR protein and mRNA levels in KB-D relative to KB-R
cells (Fig. 1). Furthermore, the rate of
hFR mRNA synthesis also
increased in KB-D cells by approximately 5-fold (Fig. 1C). However,
this observation contrasts with that of Hsueh and Dolnick (1993)
, where
no differences in the rate of
hFR mRNA synthesis were found.
Instead, they reported that increased mRNA stability of
hFR mRNA
contributes to increased
hFR levels in folate deficient KB cells.
They showed that the half-life of
hFR mRNA under low folate
conditions was increased by approximately 2.5-fold, whereas the
steady-state mRNA levels increased by approximately 5- to 10-fold.
Although differences in mRNA stability may account for a portion of the
hFR increase in folate-depleted KB cells, other regulatory
mechanisms must be involved to explain fully the folate-mediated
induction of
hFR in KB cells.
Regulation of folate-induced gene expression by DNA methylation is one
plausible explanation. Folates are directly involved in the synthesis
of SAM, the methyl donor of DNA methyltransferase (Fig. 2B). Others
have demonstrated that extracellular folate concentrations can
influence the levels of intracellular SAM in some systems (Miller et
al., 1994
) and that depletion of SAM by methyl deficiency, which
includes choline, folic acid, methionine, and vitamin
B12, decreases the overall methylation of DNA
(Wainfan et al., 1989
) and of specific genes (Wu and Santi, 1987
) in
vivo. In the current study, folate deficiency in KB cells was achieved by continuous culture in low folate medium. Unlike previous reports of
methyl-deficiency, the intracellular levels of SAM and SAH increased in
KB-D compared with KB-R model cell lines (Table 1).
Folates are needed for the methylation of homocysteine to generate
methionine, the immediate precursor of SAM. A deficiency in folate
would increase the levels of homocysteine and reverse the SAH hydrolase
reaction, leading to elevated levels of SAH. SAH has been reported to
be a competitive inhibitor of bacterial DNA methyltransferase, with
respect to SAM (Wu and Santi, 1987
). A decrease of DNA methylation
reactions caused by elevated SAH would result in increased levels of
free intracellular SAM. Furthermore, compared with the ratio of SAM to
SAH, the absolute levels of SAH are thought to be a more important
indicator of whether methylation reactions are inhibited, (Capdevila et
al., 1997
). Table 1 shows a small change in the SAM/SAH ratio in KB-D
(7.4) verses KB-R (10.2) cells. However, the increase in SAH in KB-D
compared with KB-R cells was approximately 2-fold. For these reasons,
an increase in the levels of both intracellular SAM and SAH would be an
expected consequence of physiologic folate deficiency.
The differential display analysis in the present study supports the hypothesis that folate deficiency induces global DNA hypomethylation, thereby increasing the transcriptional activity of genes whose expression is normally suppressed by DNA methylation. We show increased and de novo expression of numerous PCR-amplified cDNA fragments using three different amplimer sets (Fig. 2A). It is possible that these transcripts represent demethylated genes, including genes for which expression is not normally present in these cells or required for cell survival in culture.
We questioned whether or not
hFR induction by folate
deficiency involved DNA methylation. In human cells, methylation of DNA
normally occurs at the 5 position of cytosines that reside 5' to
guanines. Expression of genes containing 5' CG-rich clusters, called
CpG islands, is known to be decreased or completely silenced by CpG
methylation (Tykocinski and Max, 1984
; Bird, 1986
). By constructing a
CpG map, we determined that the
hFR gene sequences do not
encompasses a CpG island (Fig. 3). Folate regulation of
hFR may not
involve CpG methylation directly; however, extracellular folate levels
and CpG methylation may influence the gene products of factors that
regulate
hFR. Alternatively, mechanisms that do not involve DNA
methylation may play a role in folate-mediated regulation of
hFR.
These may include mechanisms that are involved in end-product feedback
regulation of folate homeostasis. Such a system has been noted in the
cholesterol-induced activation of sterol regulatory element-binding
proteins (Nohturfft et al., 2000
).
The present study examined the impact of extracellular folate levels on global gene expression by microarray analysis. We identified only eight genes for which mRNA levels were reproducibly different in KB-R and KB-D cells. Three genes were up-regulated and five were down-regulated (Table 2). It is unexpected that deficiency in the extracellular levels of folate would effect the expression of only a small cohort of genes. Folates serve as cofactors for numerous biochemical processes, including DNA synthesis and methyl transfer reactions. In the present study, we have sampled the expression of only 2008 genes and have used a cell line with its own unique genetic characteristics. A more accurate reflection of the effect of extracellular folate levels on gene expression might entail higher density cDNA chips and examination of additional cell types.
We determined that H-cadherin mRNA levels decreased by approximately
2.5-fold in KB-D, compared with KB-R cells (Fig. 4). We examined
whether this was associated with increased methylation, because
previous reports suggest that loss of H-cadherin activity may be caused
by hypermethylation of its 5' GC-rich sequences (Sato et al., 1998
). We
discovered that folate deficiency produced the same effect. Southern
blot analysis showed decrease cleavage of genomic DNA from KB-D,
compared with KB-R cells, by HpaII, a methyl-sensitive
restriction enzyme. Additionally, quantitative real-time PCR
analysis using methyl-specific primers and sodium bisulfite-treated
genomic DNA showed a significant increase (40%) in CpG methylation of
H-cadherin sequences in KB-D cells (Fig. 6B).
It is paradoxical that a decrease in folate, the cofactor required for
the synthesis of SAM, would induce DNA hypermethylation. The data
demonstrate the gene-specific nature of response to low extracellular
folate. H-cadherin is one member of a large family of transmembrane
glycoproteins that mediates cell-cell adhesion and maintains normal
tissue architecture (Nagafuchi and Takeichi, 1989
; Takeichi, 1991
,1993
;
Stappert and Kembler, 1993
). It is now clear that cadherin dysfunction
is implicated in tumor development (Nagafuchi and Takeichi, 1989
, 1993;
Takeichi, 1991
; Stappert and Kembler, 1993
). Repression of H-cadherin
under folate-deficient conditions may be an effector of the malignant
phenotype that has been associated with low folate. Future studies are
required to determine whether regulation of the transcription program
by folate plays a role in malignant transformation.
| |
Footnotes |
|---|
Received February 9, 2001; Accepted August 29, 2001
Dr. Mona S. Jhaveri, Department of Oncology, Lombardi Cancer Center, Georgetown University Medical Center, Washington, DC 20007. E-mail: msj8{at}georgetown.edu
| |
Abbreviations |
|---|
FBP, folate binding protein;
hFR, human
folate receptor;
N-5 MTHF, 5-methyltetrahydrofolate;
SAM, S-adenosylmethionine;
KB-R, KB cells grown in
standard media (containing >2000 nM folate);
KB-D, KB cells grown in
low folate media (containing 2-10 nM folate);
PCR, polymerase chain
reaction;
SSII, Superscript II RT;
RT, reverse transcription;
bp, base pair(s);
SAH, S-adenosylhomocysteine.
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References |
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M. C. Anguera, M. S. Field, C. Perry, H. Ghandour, E.-P. Chiang, J. Selhub, B. Shane, and P. J. Stover Regulation of Folate-mediated One-carbon Metabolism by 10-Formyltetrahydrofolate Dehydrogenase J. Biol. Chem., July 7, 2006; 281(27): 18335 - 18342. [Abstract] [Full Text] [PDF] |
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P. Novakovic, J. M. Stempak, K.-J. Sohn, and Y.-I. Kim Effects of folate deficiency on gene expression in the apoptosis and cancer pathways in colon cancer cells Carcinogenesis, May 1, 2006; 27(5): 916 - 924. [Abstract] [Full Text] [PDF] |
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H. Jang, J. B. Mason, and S.-W. Choi Genetic and Epigenetic Interactions between Folate and Aging in Carcinogenesis J. Nutr., December 1, 2005; 135(12): 2967S - 2971S. [Abstract] [Full Text] [PDF] |
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Y.-I. Kim Nutritional Epigenetics: Impact of Folate Deficiency on DNA Methylation and Colon Cancer Susceptibility J. Nutr., November 1, 2005; 135(11): 2703 - 2709. [Abstract] [Full Text] [PDF] |
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J. M. Stempak, K.-J. Sohn, E.-P. Chiang, B. Shane, and Y.-I. Kim Cell and stage of transformation-specific effects of folate deficiency on methionine cycle intermediates and DNA methylation in an in vitro model Carcinogenesis, May 1, 2005; 26(5): 981 - 990. [Abstract] [Full Text] [PDF] |
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M. Liu, Y. Ge, D. C. Cabelof, A. Aboukameel, A. R. Heydari, R. Mohammad, and L. H. Matherly Structure and Regulation of the Murine Reduced Folate Carrier Gene: IDENTIFICATION OF FOUR NONCODING EXONS AND PROMOTERS AND REGULATION BY DIETARY FOLATES J. Biol. Chem., February 18, 2005; 280(7): 5588 - 5597. [Abstract] [Full Text] [PDF] |
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D. W.L. Ma, R. H. Finnell, L. A. Davidson, E. S. Callaway, O. Spiegelstein, J. A. Piedrahita, J. M. Salbaum, C. Kappen, B. R. Weeks, J. James, et al. Folate Transport Gene Inactivation in Mice Increases Sensitivity to Colon Carcinogenesis Cancer Res., February 1, 2005; 65(3): 887 - 897. [Abstract] [Full Text] [PDF] |
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C. D. Davis and E. O. Uthus DNA Methylation, Cancer Susceptibility, and Nutrient Interactions Experimental Biology and Medicine, November 1, 2004; 229(10): 988 - 995. [Abstract] [Full Text] [PDF] |
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C. Courtemanche, I. Elson-Schwab, S. T. Mashiyama, N. Kerry, and B. N. Ames Folate Deficiency Inhibits the Proliferation of Primary Human CD8+ T Lymphocytes In Vitro J. Immunol., September 1, 2004; 173(5): 3186 - 3192. [Abstract] [Full Text] [PDF] |
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Y.-I. Kim Folate and DNA Methylation: A Mechanistic Link between Folate Deficiency and Colorectal Cancer? Cancer Epidemiol. Biomarkers Prev., April 1, 2004; 13(4): 511 - 519. [Abstract] [Full Text] [PDF] |
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J. W. Crott, S.-W. Choi, J. M. Ordovas, J. S. Ditelberg, and J. B. Mason Effects of dietary folate and aging on gene expression in the colonic mucosa of rats: implications for carcinogenesis Carcinogenesis, January 1, 2004; 25(1): 69 - 76. [Abstract] [Full Text] [PDF] |
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N. V. Oleinik and S. A. Krupenko Ectopic Expression of 10-Formyltetrahydrofolate Dehydrogenase in A549 Cells Induces G1 Cell Cycle Arrest and Apoptosis Mol. Cancer Res., June 1, 2003; 1(8): 577 - 588. [Abstract] [Full Text] [PDF] |
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K.-J. Sohn, J. M. Stempak, S. Reid, S. Shirwadkar, J. B. Mason, and Y.-I. Kim The effect of dietary folate on genomic and p53-specific DNA methylation in rat colon Carcinogenesis, January 1, 2003; 24(1): 81 - 90. [Abstract] [Full Text] [PDF] |
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S. Friso and S.-W. Choi Gene-Nutrient Interactions and DNA Methylation J. Nutr., August 1, 2002; 132(8): 2382S - 2387. [Abstract] [Full Text] [PDF] |
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S.-W. Choi and J. B. Mason Folate Status: Effects on Pathways of Colorectal Carcinogenesis J. Nutr., August 1, 2002; 132(8): 2413S - 2418. [Abstract] [Full Text] [PDF] |
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