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Vol. 63, Issue 2, 283-288, February 2003
Department of Pharmacology (B.L.C., T.R.T.), NMR Facility (W.R.K., S.G.), College of Medicine, and ITS Research Technologies (B.M.K.), University of Iowa, Iowa City, Iowa
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Abstract |
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The UDP-glucuronosyltransferase UGT2B7 is an important human UGT isoform that catalyzes the conjugation of many endogenous and exogenous compounds, among them opioids, resulting in the formation of D-glucuronides. The binding site of the aglycone is located in the N-terminal half of the protein. Using NMR analysis, we demonstrate that the opioid binding site in UGT2B7 is within the 84 to 118 N-terminal amino acids. Three maltose binding protein-UGT2B7 fusion proteins, 2B7F3 and 2B7F4 incorporating the amino acids 24 to 118 and 24 to 96 of UGT2B7, respectively, and 2B7F5 incorporating amino acids 84 to 118 of UGT2B7 were expressed in Escherichia coli and purified by affinity chromatography. NMR analysis showed that morphine was bound to the fusion protein 2B7F3 with a KD value similar to the KD values obtained for the previously produced fusion proteins, which included amino acids 24 to 180. Morphine did not bind to 2B7F4, but it did bind to 2B7F5. Both NMR 1-D spectra and NOESY experiments indicated that the 2B7F5 protein was mediating magnetization transfer within the morphine. These results allowed us to predict and model a binding site within the amino acids 96 to 101 of UGT2B7. A mutant fusion protein 2B7F3 with the substitution D99A was produced, and the NMR spectroscopy analysis of the protein supported the model. A marked reduction of morphine binding was observed when the charged aspartate was substituted with alanine.
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Introduction |
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Of
the more than 30 mammalian isoforms of UDP-glucuronosyltransferase that
have been identified, the human UGT2B7 isoenzyme is one of the most
important. It is expressed in liver, kidney, intestine, colon, testis,
and brain (King et al., 2000
), and it catalyzes the glucuronidation of
opioids, androsterone, catechol estrogens, hyodeoxycholic acid,
nonsteroidal anti-inflammatory drugs, 3'-azido-3'-dideoxythymidine, and
retinoic acid with high efficiency (Ritter et al., 1990
; Jin et al.,
1993
; Coffman et al., 1998
; Barbier et al., 2000
; Samokyszyn et al.,
2000
). This enzyme and its simian homolog UGT2B9 (Green et al., 1997
)
are the only enzymes that catalyze the glucuronidation of both the 3-OH
and 6-OH positions of opioids when present and thus provide for the
formation of the pharmacologically active morphine-6-glucuronide and
codeine-6-glucuronide (Coffman et al., 1997
). The presence of UGT2B7 in
the human central nervous system where the µ-opioid receptors are
located is important because morphine 6-O-glucuronide is
more active than morphine (Osborne et al., 1990
).
Activity studies of expressed chimeric UGT cDNAs have shown that the
aglycone binding domain is likely to be seated within the first 298 amino acids of the N terminus of the protein, presumably in the region
of amino acids 55 to 180, a region with the least homology of primary
sequence between the UGT isoforms (Mackenzie, 1990
). We have
demonstrated previously using maltose binding protein-UGT2B7 fusion
proteins that the opioids bind to the amino acids 24 to 142 of UGT2B7
(Coffman et al., 2001
), and only one binding site was predicted from
the data obtained. This was demonstrated by NMR spectroscopy and
equilibrium dialysis. The dissociation constants (KD), as determined experimentally,
were found to be similar to the Km
values reported for the full-length and functional activity of
full-length UGT2B7.
In this study, we designed four soluble fusion proteins. Three soluble fusion proteins were generated, containing the maltose binding protein (MBP) and the N-terminal amino acids 24 to 118, 24 to 96, and 84 to 118, respectively, of the UGT2B7 isoenzyme. Specific binding of morphine to the UGT2B7 domain of these fusion proteins was demonstrated by NMR spectroscopy analysis. Modeling techniques were then used to propose a plausible binding site focusing primarily on amino acids 96 to 101. To test the model, a mutation was produced in which aspartate 99 was changed to alanine. Binding studies using NMR spectroscopy were then carried out, and morphine binding to the wild-type protein was compared with the protein containing the mutant.
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Materials and Methods |
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Materials. The pMalc2x vector, maltose binding protein, and amylose resin were obtained from New England Biolabs (Beverly, MA). The QuickChange Site-Directed Mutagenesis Kit was purchased from Stratagene (La Jolla, CA). Morphine sulfate was obtained from Merck (Whitehouse Station, NJ). All other chemicals were from Sigma Chemical Co. (St. Louis, MO).
Construction of Expression Plasmids and Purification of the
UGT2B7 Fusion Proteins.
The MBP-tagged fusion proteins 2B7F1 and
2B7F2 containing the amino acids 24 to 180 and 24 to 142 of UGT2B7,
respectively, were produced and characterized as described previously
(Coffman et al., 2001
). The cDNA encoding for the MBP-tagged fusion
proteins 2B7F3 [UGT2B7(24-118)] and 2B7F4 [UGT2B7(24-96)] were
generated by inserting stop codon mutations in the plasmid encoding for MBP-tagged UGT2B7(24-180). The cDNA encoding for the fragment of
UGT2B7 that codes for amino acids 84 to 118 was subcloned by polymerase
chain reaction from the cDNA encoding for 2B7F3. The primers included
the restriction enzyme sites EcoR1 and PstI on the 5' and 3' ends, respectively. The polymerase chain reaction product
was ligated into the EcoR1/PstI site of the
bacterial expression vector pMalc2x, resulting in a plasmid that coded
for the MBP-tagged fusion protein 2B7F5 [MBP UGT2B7(84-118)]. The cDNA of the mutation 2B7F3 D99A was generated from the cDNA of 2B7F3
using the primer CAGATTAAGAGATGGTCAGCCCTTCCA.
NMR Spectroscopy. The binding properties of morphine to the MBP-tagged fusion proteins were analyzed by examining the effect of the proteins on the NMR spectra and relaxation rates of the morphine. All spectra were collected on the INOVA-500 500 MHz spectrometer (Varian Inc., Palo Alto, CA) in the College of Medicine NMR Facility at the University of Iowa. Spectra were processed using VNMR 6.1C software (Varian).
The sample temperature was held at 25°C for all work reported here. A 6000-Hz spectral width and 90° pulse width of 7 µs were used in all spectra. All samples were prepared with 50 mM phosphate buffer at pH 8 in D2O. Water signals were suppressed by low power saturation during all delays except for the acquisition time. Longitudinal relaxation rates were measured, and the KD values were calculated, when possible, using methods described previously (Coffman et al., 2001Molecular Modeling.
The modeling program used was SYBYL
software version 6.4 (Tripos, St. Louis, MO) on an O2 workstation (SGI,
Mountain View, CA). The methods for building the tertiary structure of
the N-terminal domain of UGT2B7, amino acids 24 to 180, were as
follows: the conformation for each amino acid was assigned manually
using the secondary structure prediction from the PHD program (Rost and Sander, 1993
). From this initial geometry, the model was minimized, and
simulated annealing was performed to explore the conformational space
of the molecule. The Biopolymer tool in SYBYL was used for building the
peptide. Energy minimization and annealing were performed using the
Kollman all-atoms force field and Kollman charges. Ten rounds of
annealing were performed by heating to 2000 K. Using the motifs for the
opioid-binding sites in CYP2D6 and the µ receptor (Modi et al., 1996
:
Sagara et al., 1996
; Mansour et al., 1997
), the motif (Asp,
Glu), (Arg, Lys), (Ser, Thr, or Cys), and (Phe, Trp, Ala, Val, Leu,
Ile) was identified in UGT2B7 from amino acids 93 to 105. The SYBYL
docking tools were then used to explore this site.
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Results |
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Expression and Characterization of Soluble MBP-Tagged Fusion
Proteins.
The three fusion proteins 2B7F3, 2B7F4, and 2B7F5 were
expressed in the Escherichia coli system in the cytosol and
were purified as described under Materials and Methods. The
molecular masses of the fusion proteins were 54 kDa, 51 kDa, and 47 kDa, as verified on SDS-polyacrylamide gel electrophoresis. The purity
was estimated to be approximately 95 to 98%. The circular dichroism
spectra of the expressed proteins exhibited
-helix structure in 50 mM phosphate at pH 8 and room temperature, demonstrating that the conditions for NMR spectroscopy were nondenaturing.
NMR Spectroscopy of Morphine Binding to Expressed MBP-Tagged Fusion
Proteins.
The morphine peak with a chemical shift of 5.68 ppm
(H-7) was used for the study of the longitudinal relaxation rate
(R1 = 1/K2) and the
calculation of the KD in the presence
of the fusion proteins 2B7F3 and 2B7F4.
The results are summarized in Fig. 1 together with data
published previously (Coffman et al., 2001
). The results demonstrate
clearly that the binding site is within amino acids 24 to 118 of
UGT2B7. The fusion protein 2B7F4 does not bind morphine. Previously we
showed that the MBP itself does not bind morphine (Coffman et al.,
2001
).
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Molecular Modeling of a Possible Opioid-Binding Site in
UGT2B7(84-118).
The data from the analysis by NMR spectroscopy
demonstrated that morphine binds to the peptide 2B7F5. The predicted
secondary structure of this peptide (Fig. 2) contains two
-helices
connected by a string of amino acids with undefined structure. Using
the methods described under Materials and Methods, we were
able to define this area as a loop with a pocket formed by amino acids 96 to 101 and to dock morphine and buprenorphine in the pocket.
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Mutagenesis of Aspartate 99 in the Proposed Opioid-Binding
Site.
The results of the NMR spectroscopy analysis of morphine
binding to 2B7F3D99A is shown in Fig. 8.
The relaxation rates for 2B7F3D99A are much lower than those found for
the wild-type protein. This indicates that substitution of the charged
aspartate 99 with an uncharged alanine results in a marked reduction in
morphine binding. This observation lends further credence to the model proposed.
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Discussion |
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This study was designed to further explore the aglycone binding
region of UGT2B7. It has previously been shown that opioid compounds
bind to a single site on the first 119 amino acids of the N-terminal
end of UGT2B7. Two possible binding sites were suggested for this
region, one in the domain from amino acids 93 to 105, and one in the
domain from amino acids 116 to 132 (Coffman et al., 2001
).
In the present study, three new fusion proteins containing fractions
from the N-terminal end of UGT2B7 and maltose binding protein were
produced and isolated. NMR experiments show that morphine binds to the
fusion protein 2B7F3 with a KD value
similar to the KD values obtained for
the previously produced fusion proteins 2B7F1 and 2B7F2 (Fig. 1)
(Coffman et al., 2001
). This result indicates that the binding site for
opioids is within amino acids 24 to 118 of the UGT2B7 protein. The
second fusion protein, 2B7F4, in which the UGT2B7 peptide stops at
amino acid 96, did not bind morphine.
The fusion protein 2B7F5, containing the maltose binding protein and amino acids 84 to 118 of UGT2B7, was then produced and isolated, and the binding of morphine to 2B7F5 was confirmed four different ways using NMR spectroscopy techniques. In the presence of the protein 2B7F5, there was (1) an increase in the morphine relaxation rate; (2) a change in the chemical shift in the peaks for morphine H-1, H-2, H-7, and H-8; (3) the negative sign on both diagonal and cross-diagonal peaks in the NOESY spectrum; and (4) displacement of morphine by naloxone.
The change in the chemical shifts (Fig. 4) and the appearance of new peaks in the NOESY spectrum (Fig. 6B) when both morphine and protein 2B7F5 are present indicates that the protein mediates the transfer of magnetization within the morphine. This could take place if either or both the protein and morphine changed conformation upon the binding of morphine to 2B7F5. Another possibility is a transfer between two morphine molecules bound in two different positions, for example the 3-OH or 6-OH group being exposed. Studies are in progress to distinguish between these possibilities.
The secondary structure of the UGT2B7 peptide is predicted to be a loop
between two
-helices (Fig. 2). The two
-helices both are
amphipathic [Helical Wheel tool
(http://marqusee9.berkeley.edu/kael/helical.htm)], suggesting
that a hydrophobic environment exists close to the loop. The loop
(amino acids 93-105) between the helices contains the motif (Asp,
Glu), (Arg, Lys), (Ser, Thr, or Cys), and (Phe, Trp, Ala, Val, Leu,
Ile), which are the elements necessary for morphine binding as deduced
from the opioid-binding sites of CYPD6 and the µ receptors (Modi et
al., 1996
; Sagara et al., 1996
; Mansour et al., 1997
). Molecular
modeling techniques were then used to illustrate how morphine or
buprenorphine were able to fit into a pocket in the loop formed by the
amino acids R96-W97-S98-D99-L100-P101 (Fig. 7). There were few steric
hindrances, and it was possible to bring the opioid molecules close
enough to the peptide moiety for possible hydrogen bonding and ionic
bonding to take place. It is important to note that it is possible to
dock morphine with either its 3-OH or 6-OH positions exposed, depending
on the position of the phenolic ring. UGT2B7 is the only UGT isoenzyme
that is able to catalyze the glucuronidation of opioid 6-OH positions, as in morphine and codeine, the latter having a methyl group on the C3
position. Also, buprenorphine, having a greater affinity for UGT2B7,
fits tightly in the pocket, which is consistent with a low
KD value observed previously (Coffman
et al., 2001
) and with the low Km
value for the enzymatic reaction using the holoprotein UGT2B7 (Coffman
et al., 1998
).
Further support for the proposed model was demonstrated by studies conducted with a fusion protein of amino acids 24 to 118 of UGT2B7 in which a mutation was produced at amino acid 99. In the model, amino acid 99, an aspartic acid, is proposed to be a factor in the binding of the morphine nitrogen. Insertion of an alanine, which has no charge, for an aspartate, which is negatively charged, led to a marked reduction in morphine binding. Further studies to test the validity of the model are currently underway.
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Acknowledgments |
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We thank Erik Twait for assistance in the preparation of the proteins.
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Footnotes |
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Received June 14, 2002; Accepted October 15, 2002
This work was supported by National Institutes of Health grant GM26221 (to T.R.T.). Support from the College of Medicine, University of Iowa (to W.R.K.), is also acknowledged.
Address correspondence to: Dr. Thomas R. Tephly, University of Iowa, Department of Pharmacology, BSB 2-452, Iowa City, IA 52242. E-mail: ttephly{at}blue.weeg.uiowa.edu
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Abbreviations |
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UGT, UDP-glucuronosyltransferase; MBP, maltose binding protein; NOESY, nuclear Overhauser effect spectroscopy; 2B7F1, fusion protein of amino acids 24 to 180 from UGT2B7 and MBP; 2B7F2, fusion protein of amino acids 24 to 142 from UGT2B7 and MBP; 2B7F3, fusion protein of amino acids 24 to 118 from UGT2B7 and MBP; 2B7F4, fusion protein of amino acids 24 to 96 from UGT2B7 and MBP; 2B7F5, fusion protein of amino acids 84 to 118 from UGT2B7 and MBP.
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References |
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the use of the proton-proton transferred nuclear Overhauser enhancement.
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