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Vol. 63, Issue 3, 597-606, March 2003
Department of Biology, University of South Florida, Tampa, Florida
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Abstract |
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The aryl hydrocarbon receptor (AHR) is a ligand-activated transcription factor that is also a substrate for the 26S proteasome. However, the subcellular location of the degradation events or the requirement for nuclear transport has not been resolved. To gain insight into both ligand-dependent and independent degradation of the AHR, studies were designed to evaluate the relationship between AHR localization, stability, and gene regulation in a defined cell culture model system. The strategy of these studies was to generate stable cell lines expressing murine AHR proteins that were defective in nuclear import and then to assess the location of the AHR, the time course of AHR degradation, and the level of induction of endogenous CYP1A1 protein after exposure to 2,3,7,8-tetrachlorodibezo-p-dioxin (TCDD), geldanamycin (GA), or the protease inhibitor carbobenzoxy-L-leucyl-L-leucyl-leucinal (MG-132). Mutation within the putative nuclear localization sequence (NLS) resulted in AHR mutants that were severely defective in nuclear import as evaluated by immunocytochemical staining after exposure to TCDD, GA, or MG-132. Importantly, the NLS mutants exhibited identical levels of degradation along a similar time course as wild-type AHR after exposure to TCDD or GA when stably expressed in either murine hepatoma cells (Hepa-1) or hamster lung cells (E36). In contrast, the NLS mutants were severely defective in ligand-mediated induction of CYP1A1 expression. These findings imply that the proteolytic machinery present in the cytoplasmic compartment is sufficient to degrade the AHR and that nuclear translocation, binding with ARNT, or DNA binding are not necessary for efficient degradation of the AHR.
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Introduction |
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The
aryl hydrocarbon receptor (AHR) is a ligand activated transcription
factor that is a member of the basic-helix-loop-helix (bHLH)
periodicity/aryl hydrocarbon nuclear translocator (ARNT)/single-minded family of proteins. The current model of AHR-mediated signal
transduction proposes that the AHR is activated by ligand, associates
with the ARNT protein in the nucleus to modify gene regulation, and then becomes degraded (reviewed in Hahn, 1998
; Whitlock, 1999
; Gu et
al., 2000
). The mechanism whereby the AHR is degraded has been studied
in a number of laboratories, and the consensus is that the liganded AHR
is ubiquinated and then degraded by the 26S proteasome pathway
(reviewed in Pollenz, 2002
). The importance of controlling the level of
activated AHR is underscored by the finding that blockage of
degradation results in potentiation of gene induction (Davarinos and
Pollenz, 1999
; Ma and Baldwin, 2000
), and the finding that a
constitutively active AHR results in reduced life span and stomach
tumors in transgenic mice (Andersson et al., 2002
). Thus, it is
critical to determine the subcellular location of the degradation
events; this will impact the mechanism by which the level of the AHR is
regulated, will influence the types of protein-protein interactions
that can occur in an active or latent state, and will define the types
of ubiquitin ligases involved in the degradation process. From initial
studies of the AHR signal transduction pathway, it was shown that
ligand-mediated nuclear import preceded AHR degradation and thus it was
proposed that degradation occurred within the nuclear compartment
(Pollenz et al., 1994
; Pollenz, 1996
). However, it was later shown that ligand-mediated degradation of the AHR was completely inhibited by
leptomycin B (LMB) and that the AHR remained predominately nuclear in
the presence of LMB and TCDD (Davarinos and Pollenz, 1999
).
Importantly, the AHR·ARNT complexes detected in the nucleus of cells
treated with LMB and TCDD were capable of binding to XRE sequences in
gel-shift assays. However, despite the high levels of AHR·ARNT
dimers, LMB-treated cells expressed greatly reduced levels of CYP1A1
(Davarinos and Pollenz, 1999
; Pollenz and Barbour, 2000
). Because the
AHR contains at least two putative nuclear export sequences (Ikuta et
al., 1998
; Davarinos and Pollenz, 1999
; Pollenz and Barbour, 2000
; Berg
and Pongratz, 2001
), these results suggest that either the AHR is
exported from the nucleus to be degraded or that an inhibitor of AHR
degradation is retained within the nuclear compartment in cells treated
with LMB. To further assess this question, the degradation of the AHR
was evaluated in cells transiently expressing AHR proteins defective in
nuclear export. In these studies, it was shown that mutation of leucine 69 to alanine produced an AHR (termed AHRA69)
that dimerized with ARNT, bound DNA, and was functional in the
induction of TCDD-responsive reporter genes (Pollenz and Barbour,
2000
). However, the AHRA69 seemed to accumulate
in the nucleus after ligand exposure and exhibited reduced levels of
degradation. Thus, these studies suggest that either mutation of L69
directly impacts degradation of the AHR in the nucleus or a model in
which the AHR is degraded within the cytoplasmic compartment after
nuclear export. The later mechanism would allow proteolysis to occur
within a cellular compartment distinct from the site of gene
activation, as has been described for p53 (Haupt et al., 1997
; Roth et
al., 1998
), p27Kip (Tomoda et al., 1999
),
and p27Xic1 (Chuang and Yew, 2001
).
Although the studies on the nuclear export of the AHR provide
compelling results, there is growing evidence that the AHR may also be
targeted for degradation within the nucleus or may require nuclear
translocation for degradation to occur. First, treatment of numerous
cell lines with geldanamycin (GA) results in rapid accumulation of the
AHR in the nucleus in a ligand-independent manner and subsequent
degradation (Chen et al., 1997
; Meyer et al., 2000
; Song and Pollenz,
2002
). However, although the proteasome inhibitor MG-132 can block
GA-induced degradation to the same degree as TCDD-mediated degradation,
the GA-mediated degradation event is not inhibited by LMB (Song and
Pollenz, 2002
). Second, a constitutively nuclear AHR (termed DRNLS) has
been shown to have a half-life of less than 2 h in the presence or
absence of ligand even though degradation can be blocked by MG-132 or
mutant ubiquitins (Roberts and Whitelaw, 1999
). The interpretation of these results was that the DRNLS was being degraded by the 26S proteasome in the nuclear compartment in a ligand-independent manner,
although the affect of LMB on the degradation was not evaluated.
Finally, it has also been suggested that the AHR may require DNA
binding before being targeted for degradation (Ma and Baldwin, 2000
).
Collectively, these studies suggest that the degradation of the AHR may
occur in the nucleus or require shuttling through the
nucleus before the degradation events. In addition, it is possible that
nuclear degradation of the AHR may be caused by recognition of an
AHR·hsp90·immunophlin core complex that is not in the correct
conformation (such as the DRNLS or an AHR associated with hsp90 bound
with GA). Importantly, degradation of the bHLH transcription factor
MyoD has recently been shown to occur in the nucleus via the 26S
proteasome pathway (Floyd et al., 2001
). To gain additional insight
into both ligand-dependent and independent degradation of the AHR,
studies were designed to evaluate the relationship between AHR
localization, stability, and gene regulation in a defined cell culture
model system. The strategy of these studies was to generate stable cell
lines expressing murine AHR proteins that were defective in nuclear
import and then to assess the location of the AHR, the time course of
AHR degradation and the level of induction of endogenous CYP1A1 after
exposure to TCDD, GA, and MG-132.
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Materials and Methods |
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Materials. TCDD (98% stated chemical purity) was obtained from Radian Corp. (Austin, TX) and was solubilized in dimethyl sulfoxide (Me2SO). LMB and GA were purchased from Sigma (St. Louis). MG-132 was purchased from Calbiochem (San Diego, CA).
Buffers. PBS is 0.8% NaCl, 0.02% KCl, 0.14% Na2HPO4, 0.02% KH2PO4, pH 7.4. Gel sample buffer (2×) is 125 mM Tris, pH 6.8, 4% SDS, 25% glycerol, 4 mM EDTA, 20 mM dithiothreitol, 0.005% bromphenol blue. Tris-buffered saline is 50 mM Tris and 150 mM NaCl, pH 7.5. TTBS is 50 mM Tris, 0.2% Tween 20, 150 mM NaCl, pH 7.5. TTBS+ is 50 mM Tris, 0.5% Tween 20, 300 mM NaCl, pH 7.5. BLOTTO is 5% dry milk in TTBS. Lysis buffer (2×) is 50 mM HEPES, pH 7.4, 40 mM sodium molybdate, 10 mM EGTA, 6 mM MgCl2, and 20% glycerol. Gel shift buffer (5×) is 50 mM HEPES, pH 7.5, 15 mM MgCl2 and 50% glycerol.
Cells and Growth Conditions. Wild-type Hepa-1c1c7(Hepa-1) and type I (LA-I) Hepa-1 variants were a generous gift from Dr. James Whitlock, Jr. (Department of Pharmacology, Stanford University, Stanford, CA). A7 rat smooth muscle cells were purchased from the American Type Culture Collection (Manassas, VA). All cells were propagated in DMEM supplemented with 5% fetal bovine serum. All cells were passaged at 1-week intervals and used in experiments during a 2-month period at approximately 70% confluence. For treatment regimens, TCDD, MG-132, and GA were administered directly into growth media for the indicated incubation times. The vehicle used for TCDD, GA, and MG-132 was Me2SO, the final concentration of which ranged from 0.05 to 0.5%.
Antibodies.
Specific antibodies against either the AHR (A-1,
A-1A) are identical to those described previously (Pollenz et al.,
1994
; Holmes and Pollenz, 1997
). All antibodies are affinity-purified IgG fractions. For Western blot analysis, goat anti-rabbit antibodies conjugated to horseradish peroxidase (GAR-HRP) were used. For immunohistochemical studies, goat anti-rabbit IgG conjugated to rhodamine (GAR-RHO) were used. Both of these reagents were purchased from Jackson Immunoresearch (West Grove, PA). Polyclonal rabbit
-actin antibodies were purchased from Sigma (St. Louis, MO). Polyclonal antibodies specific to rat CYP1A1 were purchased from Chemicon (Temecula, CA).
Generation of Stable Cell Lines Expressing AHR. Wild-type murine AHR cDNA was amplified by PCR and ligated into the retroviral expression vector pLNCX2 to generate pMAHRretro as detailed by the manufacture (BD Clontech, Palo Alto, CA). AHR mutated in the nuclear localization signal (NLS) were generated in pMAHRretro by the QuikChange in vitro mutagenesis system as detailed by the manufacturer (Stratagene, La Jolla, CA) to generate pNLS2retro and pNLS1retro. The retroviral vectors were then transfected into packaging cell lines and viral containing media harvested as detailed by the manufacture (BD Clontech). Viral media was used to infect LA-I Hepa-1 or E36 cells and stable cell lines selected in 800 µg/ml of G-418. Surviving colonies (20-50) were isolated for each AHR and subjected to an additional round of selection. Stable cell lines that survived the second round of selection were analyzed for AHR expression and frozen in liquid nitrogen for future studies. For all experiments described in this report, at least three independent cell lines were evaluated for each AHR studied. All cells were maintained in selective media during propagation, but G-418 was removed from the media during treatment with TCDD, GA, or MG-132. All experiments were carried out during 2-month intervals, and stable lines were checked weekly for changes in the level of AHR expression. Control LA-I or E36 cells used in the studies were infected with naked virus and maintained under identical selective pressure as the AHR-expressing cells.
In Vitro Expression of Protein.
Recombinant protein
was produced from expression constructs using the TNT
Coupled Reticulocyte Lysate System essentially as detailed by the
manufacturer (Promega, Madison, WI). Upon completion of the 90-min
reaction, samples were either combined with an equal volume of 2× gel
sample buffer and boiled for 5 min or stored at
80°C for use in
functional studies
Preparation of Total Cell Lysates.
After treatment, cell
monolayers were washed twice with PBS and detached from plates by
trypsinization (0.05% trypsin/0.5 mM EDTA). Cell pellets were then
washed with PBS and suspended in 50 to 100 µl of ice-cold 2× lysis
buffer supplemented with Nonidet P-40 (0.5%), leupeptin (10 µg/ml),
and aprotinin (20 µg/ml). Cell suspensions were immediately sonicated
for 10 s, supplemented with phenylmethylsulfonyl fluoride (final
concentration, 100 µM), and sonicated for an additional 10 s. A
small portion of the lysate was then removed for protein determination,
and the remainder was combined with an equal volume of 2× gel sample
buffer, vortexed, and immediately heated for 5 min at 100°C. Samples
were stored at
20°C. Protein concentrations were determined by the
Coomassie Blue Plus assay (Pierce, Rockford, IL) with bovine serum
albumin as the standard
Western Blot Analysis and Quantification of Protein.
Protein
samples were resolved by denaturing electrophoresis on discontinuous
polyacrylamide slab gels (SDS-PAGE) and were electrophoretically
transferred to nitrocellulose. Immunochemical staining was carried out
with varying concentrations of primary antibody (figure legends)
in BLOTTO buffer supplemented with DL-histidine (20 mM) for
1 to 2 h at 22°C. Blots were washed with three changes of TTBS+
for a total of 45 min. The blot was then incubated in BLOTTO buffer
containing a 1:12,000 dilution of GAR-HRP for 1 h at 22°C and
washed in three changes of TTBS+ as above. Before detection, the blots
were washed in Tris-buffered saline for 5 min. Bands were visualized
with the enhanced chemiluminescence (ECL) kit as specified by the
manufacturer (Amersham Biosciences, Piscataway, NJ). Multiple exposures
of each set of samples were produced. The relative concentration of
target protein was determined by computer analysis of the
autoradiographs as detailed previously (Pollenz, 1996
; Holmes and
Pollenz, 1997
; Pollenz et al., 1998
).
Immunofluorescence Staining and Microscopy.
All
immunocytochemical procedures (cell plating, fixation, and staining)
were carried out as described previously (Pollenz et al., 1994
;
Pollenz, 1996
; Holmes and Pollenz, 1997
). Cells were observed on an
Olympus IX70 microscope. On average, 15 to 20 fields (5-20 cells each)
were evaluated on each coverslip, and 3 to 4 fields were photographed
with a digital camera at the same exposure time to generate the raw
data. Experiments were repeated at least two times.
In Vitro Activation of AHR·ARNT Complexes and Electrophoretic
Mobility Shift Assay.
For EMSA, a double-stranded fragment
corresponding to the consensus XRE-1 of the murine CYP1A1 promoter
(mXRE) has been described previously (Shen and Whitlock, 1992
). For in
vitro activation, approximately 25 ng of recombinant AHR and ARNT
protein (2-6 µl of the TNT reaction) was combined with
25 mM MOPS, 10 mM EDTA, and 10% glycerol buffer in a 60-µl reaction.
Each sample was then supplemented with TCDD (16 nM) or DMSO (0.5%) and
incubated at 30°C for 2 h. The activated samples (15 µl) were
then incubated at 22°C for 15 min in 1× gel-shift buffer
supplemented with KCl (80 mM) and poly(dI/dC) (0.1 mg/ml).
Approximately 4 ng of 32P-labeled XRE was added
to each sample, and the incubation continued for an additional 15 min
at 22°C. The samples were resolved on 5% acrylamide/0.5% 45 mM
Tris-borate and 1 mM EDTA gels, dried, and exposed to film. In some
instances, activated samples were analyzed by Western blotting to
assess expression of AHR and ARNT.
Statistical Analysis Statistical analysis was carried out using InStat software (GraphPad Software Inc. San Diego, CA).
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Results and Discussion |
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Generation and Analysis of AHRs Containing Mutations within the
NLS.
The putative NLS of the AHR is a bipartite sequence that is
rich in basic amino acids (Pollenz et al., 1994
; Ikuta et al., 1998
).
It spans amino acids 12 to 41 of the murine AHR and seems to overlap
with the basic domain involved in DNA binding (Fukunaga and Hankinson,
1996
). At present, the NLS of the AHR has not been evaluated in the
context of the complete AHR amino acid sequence but has been
characterized through analysis of GFP chimeras containing peptides with
the NLS sequence derived from the human AHR (Ikuta et al., 1998
). The
results of these studies showed that alanine substitutions at either
R13, K14, R15, R16, K37, or R38 (the corresponding amino acids in the
mouse are R12, K13, R14, R15, K26, or R41; Fig.
1A) resulted in NLS-GFP chimeras that
remained predominantly cytoplasmic compared with wild-type NLS-GFP,
which was exclusively nuclear (Ikuta et al., 1998
). Thus, with these
data as a framework, in vitro mutagenesis was used to generate
full-length murine AHRs containing alanine substitution at K13 (termed
AHRNLS1) or at both R12 and K13 (termed
AHRNLS2). Because the NLS domain seems to share
basic residues that have been implicated in DNA binding (Fukunaga and
Hankinson, 1996
), it was important to functionally evaluate
AHRNLS1 and AHRNLS2
proteins before proceeding in the analysis of their degradation.
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AHRNLS2 Is Defective in Nuclear Translocation but Not
Degradation after TCDD Exposure.
To develop a model system that
would allow the analysis of nuclear translocation, degradation and gene
regulation of the two AHRNLS mutants, the cDNAs were ligated into
retroviral expression vectors and used to generate cell lines that were
stably expressing the AHRNLS and AHRWT
proteins. Two different cell lines were used to generate the stable
cells. The first was the type I Hepa-1 cell line (LA-I) that has
reduced levels of endogenous AHR protein and low levels of
ligand-inducible CYP1A1 expression (Israel and Whitlock, 1984
). The
second was the Chinese hamster lung cell line, E36, that has low levels
of AHR protein as determined by Western blotting and has been
previously used to evaluate AHR function (Davarinos and Pollenz, 1999
;
Pollenz and Barbour, 2000
; Pollenz et al., 2002
). Control cell lines
were generated by infecting cells with virus that exressed
AHRWT or virus that did not contain an insert. At
least 25 independent stable cell lines were isolated for each construct
in each cell line. Once selected, each clone was analyzed by Western
blotting and immunofluorescence microscopy to assess the level of AHR
expression and its subcellular location. Although three independent
lines were taken through the battery of studies detailed in this
report, the results from single AHRNLS1, AHRNLS2, and AHRWT clones
are shown for ease of data presentation.
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Cell Lines Expressing AHRNLS2 Exhibit Reduced Induction
of Endogenous CYP1A1 Protein after Exposure to TCDD.
Because the
AHRNLS2 protein seemed to be severely defective in nuclear
localization, but still exhibited a slight nuclear accumulation in a
ligand-dependent manner, it was pertinent to determine whether cells
expressing the AHRNLS2 protein were capable of inducing endogenous
CYP1A1. Triplicate plates of LA-I, Hepa-1, AHRWT,
AHRNLS1, or AHRNLS2 cells
were treated with Me2SO or TCDD for 8 h, and
the level of CYP1A1 protein was quantified by Western blot analysis.
Figure 6A shows a representative
experiment of the TCDD-treated samples (the control samples showed no
level of CYP1A1 protein; see time 0 in Fig. 6B). The results show that only the Hepa-1 and AHRWT induced high levels of
CYP1A1 protein after 8 h of TCDD exposure, whereas the level of
CYP1A1 induced in the AHRNLS2 cells was 11%
of the AHRWT cells. Because an AHR that was
completely defective in nuclear import would be expected to be unable
to induce any CYP1A1, the time course of induction was also evaluated.
In these studies, AHRWT and
AHRNLS2 cells were treated with TCDD for 0 to
16 h, and the level of CYP1A1 protein was evaluated by Western
blot analysis. The results show that CYP1A1 can be detected as early as
4 h in the AHRWT cells but is not detectable
in the AHRNLS2 cells for 6 to 8 h. These results are consistent with a protein that is defective in nuclear import, because gene induction is delayed and has a greatly reduced magnitude. Thus, these results add further support that the
ANRNLS2 is severely defective in nuclear import
but confirm that some fraction of the receptor is still able to reach
the nucleus and function in TCDD-mediated gene induction. However,
these results clearly separate the events of gene regulation from AHR
degradation because of the dramatic differences observed between the
AHRWT and AHRNLS2 cell
lines.
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AHRNLS2 Is Degraded after Exposure to Geldanamycin
without Localization to the Nucleus.
Previous reports have shown
that treatment of various cell lines with GA results in the rapid
degradation of the AHR in a ligand-independent manner (Chen and Perdew,
1997
; Meyer et al., 2000
; Song and Pollenz, 2002
). GA is a benzoquinone
ansamycin that directly associates with the ATP/ADP binding site of
hsp90 and can alter the conformation of hsp90 and its target binding proteins (Grenert et al., 1997
). Interestingly, the magnitude of
GA-mediated degradation is similar to that observed with TCDD, can be
inhibited by MG-132, and also seems to involve nuclear localization of
the AHR (Song and Pollenz, 2002
). Therefore it was of interest to
evaluate whether the GA-mediated degradation would be affected in cells
expressing AHRNLS proteins. In the first study,
Hepa-1, AHRNLS2, AHRNLS1,
and AHRWT cell lines were treated with GA for 0 to 120 min and the level of AHR protein was evaluated by Western blotting.
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Conclusions and Implications |
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The proteolytic degradation of transcription factors is an
established mechanism for regulating signal transduction pathways and
the complexity of the system is slowly emerging (reviewed by Pahl and
Baeuerle, 1996
; Conaway et al., 2002
). Proteolysis has been shown to be
involved in such divergent signaling systems as nuclear factor-
B
(Palombella et al., 1994
), glucocorticoid-mediated signaling (Hoeck et
al., 1989
), p53 (Haupt et al., 1997
; Roth et al., 1998
), estrogen
receptor (Nawaz et al., 1999
), and the bHLH proteins HIF-1a and MyoD
(Salceda and Caro, 1997
; Huang et al., 1998
; Floyd et al., 2001
).
Recently, the role that degradation of the AHR plays in the regulation
of the AHR signal transduction pathway has become a specific area of
research, and numerous studies have established that ligand binding
results in the rapid degradation of the AHR through the ubiquitin
proteasome system in vitro and in vivo (reviewed in Pollenz, 2002
).
Unfortunately, although AHR degradation itself is well established,
there are conflicting results regarding the subcellular location of the
ubiquitination and degradation events. Determining the location of AHR
degradation is especially pertinent because the types of proteins
associated with the AHR complex in the nucleus and cytoplasm are
different and could influence the interactions and regulation that
occur (Whitlock, 1999
; Gu et al., 2000
). In addition, there are
multiple ubiquitin ligase enzymes that can function in either the
nucleus or cytoplasm; these enzymes may even function in cellular
compartments distinct from the ultimate site of degradation (reviewed
in Glickman and Ciechanover, 2001
; Pickart, 2001
; Conaway et al.,
2002
). Such a complex system leaves open the possibility for a myriad
of protein-protein interactions. Thus, the key finding of the studies
presented in the current report is that inhibition of nuclear import of
the AHR does not impact the time course or magnitude of either
ligand-dependent or -independent degradation. The implication of these
results is that the entire complement of proteolytic machinery needed for AHR degradation is present in the cytoplasmic compartment and that
nuclear translocation, binding with ARNT, or binding to DNA is not
required for efficient degradation. The ability to observe degradation
of the various AHRNLS mutants in both a ligand-dependent and -independent manner is also important because it
now provides a model in which to begin to identify the domains of the
AHR that are required for the degradation events and determine whether
there are distinct sequences required for ligand-dependent and
-independent degradation. Because recent studies suggest that AHR-mediated gene regulation is significantly impacted if the AHR is
not degraded or is constitutively activated (Davarinos and Pollenz,
1999
; Ma et al., 2000
; Andersson et al., 2002
), an understanding of how
AHR degradation is regulated will provide important insight into this
signal transduction pathway.
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Footnotes |
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Received September 6, 2002; Accepted November 18, 2002
This work was supported in part by National Institute of Health grant ES10401 (to R.S.P.).
Address correspondence to: Richard S. Pollenz, Department of Biology, SCA110, 4202 E. Fowler Ave., University of South Florida, Tampa, FL 33620. E-mail: pollenz{at}chuma1.cas.usf.edu
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Abbreviations |
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AHR, aryl hydrocarbon receptor; bHLH, basic helix-loop-helix; ARNT, aryl hydrocarbon receptor nuclear translocator; LMB, leptomycin B; TCDD, 2,3,7,8-tetrachlorodibenzo-p-dioxin; GA, geldanamycin; MG-132 carbobenzoxy-L-leucyl-L-leucyl-leucinal, hsp90, 90-kDa heat shock protein; Me2SO, dimethyl sulfoxide; PBS, phosphate-buffered saline; TTBS, Tris-buffered saline with Tween 20; BLOTTO, bovine lacto transfer optimizer; GAR, goat anti-rabbit; HRP, horseradish peroxidase; RHO, rhodamine; NLS, nuclear localization signal; PAGE, polyacrylamide electrophoresis; ECL, enhanced chemiluminescence; EMSA, electrophoretic mobility shift assay; XRE, xenobiotic response element; GFP, green fluorescent protein; DMEM, Dulbecco's modified Eagle's media; PCR, polymerase chain reaction; WT, wild-type.
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