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Metabolic and Cardiovascular Discovery Biology (R.A.P., S.W.), Discovery Toxicology (O.P.F., R.M., C.E., F.W.), Applied Genomics (W.F., W.-P.Y.), and Virology Medical Affairs (M.A.N.), Bristol-Myers Squibb Pharmaceutical Research Institute, Pennington, New Jersey
Received December 8, 2004; accepted March 8, 2005
| Abstract |
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Previous studies revealed that protease inhibitors interfere with key intracellular processes regulating glucose and lipid metabolism in major insulin-responsive tissues. Several protease inhibitors directly inhibit glucose transporter activity in adipocytes, in particular glucose transporter (GLUT)4, which is essential for normal insulin-responsive glucose uptake in adipose and muscle (Murata et al., 2000
; Hruz et al., 2001
; Hertel et al., 2004
). Differential inhibition of GLUT4 is believed to explain differences between HIV protease inhibitors on insulin-stimulated glucose disposal in clinical studies using the euglycemic hyperinsulinemic clamp technique (Noor et al., 2002
, 2004
).
Protease inhibitors also seem to influence lipid and cholesterol metabolism by inhibiting the degradation of the key transcription factors that control lipid pathways, the sterol regulatory element binding proteins (SREBPs). Degradation of nuclear SREBPs by the proteasome was directly demonstrated in mammalian cells (Hirano et al., 2001
), and proteasome activity was unexpectedly shown to be inhibited by some HIV protease inhibitors in vitro (Schmidtke et al., 1999
; Pajonk et al., 2002
). However, effects of HIV protease inhibitors on SREBP levels and translocation and on SREBP-targeted lipogenic gene expression in liver and adipose tissue have proven to be complex (Dowell et al., 2000
; Caron et al., 2003
; Hui, 2003
). Further insight into the role of proteasome came from studies showing that processing of apolipoprotein B by proteasome activity in hepatocytes is perturbed by HIV protease inhibitor treatment in HepG2 cells (Liang et al., 2001
), which could contribute to dyslipidemia.
Interference with proteasome function could underlie the lipid effects of protease inhibitors to a greater extent than previously suggested. The surveillance function of proteasome coordinates protein synthesis, folding, and trafficking in the endoplasmic reticulum (ER), and its disruption triggers an adaptive mechanism termed the unfolded protein response (UPR) or more generally the ER stress response. This includes activation of transcription factors and downstream effectors, including ER chaperones and amino acid and protein metabolic enzymes (Travers et al., 2000
; Kaufman et al., 2002
). Other physiological factors, notably glucose or nutrient deprivation, influence ER stress and affect the scope and extent of the transcriptional response (Kaufman et al., 2002
). It was reported recently that ER stress is exacerbated by intracellular lipid deposition and that obesity and metabolic disturbances are closely linked to ER stress and its consequences in both adipose tissue and liver (Ozcan et al., 2004
).
The topology and localization of lipid synthetic enzymes in the ER suggested that further investigation of the relationship between the ER stress response and lipogenesis could provide new insights into protease inhibitor-associated lipid disorders. As first described in preliminary reports (Parker et al., 2003
), these studies revealed a deeper mechanistic link between cellular adaptive responses to protease inhibitors and the transcriptional regulation of lipid metabolism in adipocytes and hepatocytes. The results of these experiments contribute to an integrated mechanism extending previous hypotheses and help to explain the differences in metabolic profiles observed among the HIV protease inhibitors in clinical use.
| Materials and Methods |
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Biochemicals. Protease inhibitors lopinavir, nelfinavir, ritonavir, and saquinavir were purified by reverse phase high-performance liquid chromatography from commercial pharmaceutical preparations. Atazanavir was provided in pure form by Bristol-Myers Squibb Chemistry Division. Purified protease inhibitors and stock solutions in DMSO were stored at 20°C. Drugs stocks in DMSO were diluted into culture media containing bovine serum or albumin to aid solubility and sterile filtered before use. Solutions were monitored microscopically to avoid possible precipitation of drugs. Vehicle control incubations received the same final DMSO concentration as all drug-treated incubations (0.1%). Proteasome fluorogenic peptide substrates succinyl-Leu-Leu-Val-Tyr-7-amino-4-methylcoumarin (suc-LLVY-amc) and N-tert-butoxycarbonyl-LRR-7-amino-4-methylcoumarin were obtained from Bachem Biosciences (King of Prussia, PA), and human 20S proteasome preparation was obtained from Chemicon International (Temecula, CA).
Lipid Biosynthesis. Triglyceride and cholesterol synthesis were assayed in cells by incorporation of 1 µCi/ml 2-[14C]acetate over the final 3 h of 24-h incubations with protease inhibitors or times indicated. Lipids were extracted from cells in organic solvents and separated by planar chromatography followed by determination of radioactivity by microarray channel detector (Instant Imager, PerkinElmer Life and Analytical Sciences, Boston, MA).
GLUT Assay. 3T3-L1 adipocytes were incubated with protease inhibitors in Krebs-Ringer-HEPES buffer with 2% fetal bovine serum for 30 min, followed by addition of 1 µM insulin for 20 min, and then GLUT activity was assayed as uptake of [3H]2-deoxyglucose for 10 min essentially as described previously (Murata et al., 2000
). Primary adipocytes followed the same protocol except that the buffer was supplemented with 2% albumin.
FPLC Superose-6 Isolation and Assay of Proteasome Activity. Native proteasome fractions were prepared from cultures of HepG2 cells and 3T3-L1 cells (as undifferentiated preadipocytes) following the method of Rodgers and Dean (2003
), briefly as follows. Cells grown in 225-cm2 flasks were harvested at 80 to 90% confluence, and cells were lysed by shaking for 30 min at 4°C in 20 mM Tris-HCl, pH 7.5, with 10% glycerol, 5 mM ATP, and 0.2% Nonidet P-40 (buffer A). Lysates were centrifuged at 10,000g for 10 min, and the supernatant was collected and concentrated 10-fold in Centricon Plus-20 centrifuge filters (100-kDa molecular mass cut-off), followed freezing at 80°C. Aliquots (150 µl) of once-thawed concentrates were chromatographed by gel filtration on an AKTA FPLC system using Superose-6 gel filtration in buffer A at 0.50 ml/min, and fractions of 300 µl were collected at 20°C. For the assay of proteasome activity, 10-µl aliquots of each FPLC fraction were incubated in 96-well plates containing 20 mM Tris-HCl, pH 7.5, with or without respective inhibitors added with mixing to provide final concentrations indicated in figures, and a final DMSO level of 0.1%, in a total volume of 100 µl. The enzyme assay was then initiated by addition of the fluorogenic protease substrate suc-LLVY-amc at 50 µM (final), mixing, and incubation at 37°C for 45 min, followed by determination of amc product fluorescence in a Cytofluor-2 plate reader at 380 excitation/460 emission. Product formation was linearly proportional to time and enzyme concentration. Proteasome activity units are defined as relative fluorescence of LLVY-amc product per assay under these conditions. Purified human erythrocyte 20S proteasome preparations were obtained from Chemicon International. Aliquots of 20S proteasome were incubated with protease inhibitors in vitro, followed by the assay of chymotryptic proteolytic activity using the fluorogenic substrate suc-LLVY-amc as described above and essentially according to Schmidtke et al. (1999
). Reaction rates were determined over a 30-min incubation period, and percentage of inhibition was calculated.
RNA Isolation. Total cellular RNA was isolated from cultured HepG2, TC5, and 3T3-L1 cells, using the standard QIAGEN (Valencia, CA) method, including treatment with DNase. cDNA and cRNA were generated from the cellular RNA using Invitrogen (Carlsbad, CA) and Enzo Diagnostics (New York, NY) methods for gene expression profiles and real-time polymerase chain reaction (RT-PCR).
Transcriptional Profiling. Affymetrix gene profiling (human U133A chips, with 22,214 total RNA sequences profiled; and murine U74Av2 chips with 12,422 RNA sequences) was conducted to assess gene expression. RNA samples were isolated from triplicate cell incubation samples (HepG2) or from duplicate cell incubation samples repeated twice (adipocytes). Affymetrix-recommended protocol was used in the generation of cRNA probe and hybridization of chips. Suite version 5.0 was used to scan and quantitate the chip. Data were evaluated for Affymetrix P call, average change in expression (ratio of mean drug-treated/mean control), and significance of difference between drug treated and control was determined by t test (p < 0.01 taken as significant). Results for key genes were confirmed by RT-PCR.
RT-PCR. To confirm and extend the transcription profiles, mRNA for selected genes was assayed by RT-PCR in RNA samples taken from independent experiments using cell incubation time courses. SYBR green RT-PCR protocols were used to assay relative changes in gene expression, quantitated by the 
CT method, and mRNA values for each gene were normalized to internal control cyclophilin B mRNA. The ratio of normalized mean value for drug-treated groups to vehicle control was calculated and is given in the graphs.
| Results |
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20 µM), whereas MG132 strongly inhibited the tryptic activity (IC50 < 1 µM) (Fig. 1C), consistent with the properties of these well characterized, high-affinity proteasome inhibitors (Zimmermann et al., 2000
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In contrast to the suppression observed in adipocytes, in HepG2 cells protease inhibitors tended to increase lipogenesis. Triglyceride biosynthesis rate was elevated to varying degrees by the five compounds studied over 3 to 30 µM at 24 h, and 6 to 48 h at 10 µM (Fig. 2E). Cholesterol synthesis under the same conditions in HepG2 cells did not change or was modestly increased (up to 20% increase over control). No effect on cellular ATP levels was observed under these conditions, suggesting the lack of cytotoxicity. The increases in lipogenesis in HepG2 cells were observed at concentration ranges of the protease inhibitors that resulted in proteasome inhibition in vitro, although the apparent potencies in the two assays were only roughly correlated. Unlike the adipocytes, under conditions in which lipid synthesis was affected, glucose uptake was not significantly affected by any of the protease inhibitors studied in HepG2 cells. The lack of glucose transport inhibition is consistent with the finding that HepG2 cells express GLUT3 and GLUT1, which are relatively insensitive to inhibition by HIV protease inhibitors, but that do not express GLUT4, which is sensitive.
Gene Expression Profiles in Hepatocyte and Adipocyte Models. Affymetrix gene expression profiling was conducted to further evaluate cellular and molecular adaptive responses to the effects of protease inhibitors. Cells were treated for 24 h with vehicle control or protease inhibitors under the conditions used in the functional assays, followed by mRNA isolation. Overall, less than 1% of the profiled RNA sequences increased or decreased by greater than 2-fold versus controls for any of the protease inhibitors tested (from a total of 22,214 and 12,422 total sequences analyzed for HepG2 cells and adipocytes, respectively). Of the genes significantly affected, approximately 4 times as many were induced than repressed in HepG2 cells (Fig. 3A). In comparison, an opposite general pattern emerged from the adipocytes, with more genes repressed than induced (Fig. 3B). Differences between the individual protease inhibitors were apparent (Fig. 3, A and B).
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Detailed analysis of the expression profile in HepG2 cells revealed induction of several transcription factors that regulate expression of ER stress response components, including C/EBP homologous protein/GADD153, ATF4, CCAAT/EBP-
, CCAAT/EBP-
, and the proteasome-interacting LIM-domain-only protein CSRP3e (Table 1). Multiple genes for amino acid biosynthesis and transport, amino acyl tRNA synthetases, glutathione metabolism, and chaperones such as the DnaJ/HSP40 homologs involved in the ER stress response were also induced (Table 1). Other genes involved in proteasome and ER function were also induced, including ubiquitin ligase, stanniocalcin-2, calmegin, and exportin T. Suppression of serum and glucocorticoid-regulated kinase, a regulator of the E3 ubiquitin-protein ligase (Nedd4-2) was observed. The magnitudes of change in ER stress and UPR gene expression in HepG2 cells were lower for atazanavir than the other protease inhibitors tested (Table 1).
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Lipogenic Gene Expression in Coordination with ER Stress Response. The ER stress response to HIV protease inhibitors in HepG2 cells was associated with moderate but significant increases in mRNA encoding several enzymes of fatty acid and cholesterol biosynthesis pathways (Table 1). These included acetyl CoA carboxylase, fatty acyl CoA ligase, fatty acid synthase, diacylglycerol acyltransferase, HMGCoA reductase, mevalonate kinase, Nieman-Pick protein C1 (NPC1), and the low-density lipoprotein receptor. The gluconeogenic enzyme PEPCK, a known target of ATF4, was induced along with glucokinase regulatory protein (Table 1). The expression profile exhibited concentration dependence over the range of 3 to 10 µM (for nelfinavir) or 10 to 30 µM (for ritonavir and atazanavir) for several of these genes, similar to the concentration dependencies in the functional assays. It is interesting that expression of SREBP-1c and X-box binding protein-1 mRNA was not significantly affected by the protease inhibitors.
The Affymetrix transcription profile was confirmed and extended in separate experiments with HepG2 cells and the human hepatocyte TC5 cell line by quantitative RT-PCR. Coordinate induction of genes representing the ER stress response, amino acid homeostasis, and lipid/metabolic pathways were observed in time courses (Fig. 4A). Marked, rapid increases in mRNA for ATF4 (to 15-fold), GADD153 (to 12-fold), and C/EBP-
(to 6-fold) were observed for nelfinavir, ritonavir, and lopinavir in the hepatocyte cell line, whereas atazanavir-treated cells remained relatively quiescent over the 32-h time course (Fig. 4A). These changes were closely followed by induction of asparagine synthetase (up to >60-fold with nelfinavir), acetyl-coenzyme A carboxylase-
(to 4-fold with ritonavir), and PEPCK (to 25-fold with lopinavir).
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and SREBP-1c) and multiple enzymes of the lipid biosynthesis pathways were down-regulated in the adipocytes (Table 2). Key lipogenic enzymes suppressed by protease inhibitors in adipocytes included FAS, glyceraldehyde-3-phosphate dehydrogenase, acyl-CoA ligases, hormone-sensitive lipase, hydroxysteroid dehydrogenase-1, and diacylglycerol O-acyltransferase 1. An exception to this pattern was the induction of the cholesterol trafficking protein NPC1 (also induced in HepG2 cells). The adipocytokines adiponectin and resistin were down-regulated, as was the intracellular cholesterol binding protein caveolin. Other metabolic enzymes suppressed in adipocytes included PEPCK and phosphofructokinase-bisphosphatase.
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Time-course experiments in 3T3-L1 adipocytes using RT-PCR revealed rapid and strong induction of mRNA for GADD153 (to 6-fold with nelfinavir) and ATF3 (up to 35-fold with lopinavir), consistent with the ER stress response (Fig. 4B). The cholesterol trafficking gene NPC1 was also induced (to 5-fold with lopinavir). Atazanavir-treated cells were relatively unaffected. In agreement with the transcription profiles and lipid functional data, PCR assays showed time-dependent suppression of representative lipid and adipogenic genes in the adipocytes, with glyceraldehyde-3-phosphate dehydrogenase, FAS, and adiponectin reaching maximal suppression by 24 h (Fig. 4B). The time courses also exhibited a return of gene expression toward baseline levels at 32 h for both the ER stress and lipogenic genes, suggesting that the cells successfully mounted an effective counter-regulatory response to the effects of the protease inhibitors.
| Discussion |
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HIV protease inhibitors decreased proteasome chymotryptic activity and to a lesser extent tryptic activity in vitro at concentrations similar to the ranges that elicited gene expression and lipid functional effects in cells and inhibited glucose transport in adipocytes. These concentration dependencies are similar to the ranges of therapeutic plasma levels of protease inhibitors observed clinically (based on Physician's Desk Reference values). The data indicate that, relative to the high-affinity (nanomolar) proteasome inhibitors lactacystin and MG132, the HIV protease inhibitors are weak-to-moderate inhibitors of proteasome activity. The current results are consistent with previous reports that ritonavir and saquinavir inhibit chymotryptic activity of 20S proteasome in vitro and decrease protein degradation in cells (Schmidtke et al., 1999
; Gaedicke et al., 2002
; Pajonk et al., 2002
). Our findings support the idea that protease inhibitors, nanomolar inhibitors of the HIV protease, are micromolar modulators of mammalian proteasome function and specificity, and at therapeutic levels can significantly affect processing and trafficking of specific proteins in the cell and trigger a counter-regulatory response.
Our observations are consistent with previous reports implicating interference by HIV protease inhibitors with processing of nuclear transcription factors SREBP-1 and -2, C/EBP-
, and PPAR-
(Dowell et al., 2000
; Caron et al., 2003
; Hui, 2003
). Proteolytic events control SREBP processing in the ER and Golgi as well the nucleus (Hirano et al., 2001
). Nuclear turnover of SREBP was shown to be blocked by ritonavir in liver and adipose, leading to observed increases in nuclear SREBP levels (Riddle et al., 2001
; Hui, 2003
) These considerations support a broader role for proteasomal processing and degradation in cytoplasmic translocation, subnuclear localization, and coactivation of nuclear transcription factors. (Dino Rockel and von Mikecz, 2002
; Nawaz and O'Malley, 2004
).
Outside the nucleus, inhibition of proteasome activity in the ER and cytoplasm diminishes the efficient removal of misfolded nascent proteins, triggering the surveillance function of the UPR (Travers et al., 2000
). The expression profiles in HepG2 cells and 3T3-L1 adipocytes reveal induction of the UPR signature genes ATF4, ATF3, GADD153, and GADD34. ATF4 and ATF3 are basic leucine zipper transcription factors that coregulate the eIF2 kinase stress pathway, leading to induction of GADD153 and the eukaryotic initiation factor 2
protein phosphatase regulatory subunit GADD34, ultimately providing feedback control and recovery from the UPR (Jiang et al., 2004
). In our time-course data, gene expression trended back toward baseline at 32 h, suggesting an effective counter-regulatory response and recovery from the ER stress. The expression profiles for HIV protease inhibitor treated cells in our studies include several of the genes affected by the high-affinity proteasome inhibitors lactacystin and MG132 in human glioma cells, including ATF3 and GADD153 (Zimmermann et al., 2000
). The up-regulation by HIV protease inhibitors of the DnaJ/HSP40 family of chaperone proteins in both the HepG2 and adipocyte profiles is consistent with the role of these proteins in regulating the ATPase activity and substrate binding of the chaperone Hsp70 in nascent protein processing (Shen et al., 2002
). Although the interpretation of the present data relying largely on mRNA changes would be confirmed by assays of ER stress responses at the protein or biochemical level, the consistency of the transcriptional regulation observed leads to a strong conclusion of UPR and ER stress response under the conditions of the experiments.
The induction of amino acid synthetic enzymes, transporters, and amino acyl-tRNA synthetases as seen in our expression profiles suggests signaling through decreased intracellular amino acid and amino acyl-tRNA pools. Other studies have demonstrated that glucose as well as amino acid deprivation up-regulates nutrient responsive genes such as asparagine synthetase. This is mediated by ATF4 and C/EBP-
induction and activation of their target gene promoter nutrient-response elements, while increasing ATF3 expression serves to counter-regulate these target genes (Siu et al., 2002
; Pan et al., 2003
). It is interesting that asparagine synthetase was highly induced by protease inhibitors in HepG2 cells, which also exhibited significant elevations in ATF4 and C/EBP-
but not ATF3. In contrast, adipocytes expressed higher ATF3 than ATF4 and did not increase asparagine synthetase expression in our profiles. Consistent with a role for ATF4 in HepG2 cell responses, we also observed high induction of stanniocalcin-2 by protease inhibitors, a gene recently described as a target of ATF4 induction in the UPR (Ito et al., 2004
).
Several clinical studies suggest that lipoatrophy of peripheral/subcutaneous adipose tissues is a major feature of the HIV-associated lipodystrophy syndrome and of the use of protease inhibitors (Carr, 2000
). The use of nucleoside reverse transcriptase inhibitors is also associated with lipoatrophy (Nolan and Mallal, 2004
), and it has been proposed that the combination of this class with protease inhibitors may amplify this component of the syndrome. Although it is nearly impossible to fully separate the effects of the drug classes in the clinical data, animal models have demonstrated lipoatrophy in protease inhibitor-treated mice (Goetzman et al., 2003
) as well hypertriglyceridemia and liver and adipose SREBP pathway disturbances in mice (Riddle et al., 2001
). It is possible that subcutaneous fat may be more sensitive than central fat depots to diminished expression of PPAR-
and other changes in gene expression that we and others have observed with protease inhibitors. Because insulin profoundly inhibits lipolysis in adipocytes, the effects of protease inhibitors on insulin resistance could also contribute to lipolysis and diminished fat storage seen in lipoatrophy.
In summary, our findings of protease inhibitor-specific effects on gene expression and lipid and glucose metabolism in in vitro models are consistent with emerging reports of clinical trials that describe metabolic and lipid profiles after treatment with the various agents (Cahn et al., 2004
; Wood et al., 2004
; Johnson, 2005
). Future studies directed toward the comparative profiles of the different members of the protease inhibitor class may help address whether the in vitro properties are predictive of human clinical findings. The effects observed in the present studies on glucose transporter activity (particularly GLUT4) in adipocytes are consistent with recent reports showing differential effects on glucose disposal in human subjects studied by euglycemic hyperinsulinemic clamp technique (Noor et al., 2002
, 2004
). The dysregulation of lipogenesis and the ER stress responses in liver and adipocyte cellular models was seen at concentrations near or below respective therapeutic plasma levels in patients, suggesting that they could be related to the clinical lipid profiles of the protease inhibitors (Haas et al., 2003
; Murphy et al., 2003
; Sanne et al., 2003
; Calza et al., 2004
; Squires et al., 2004
). Although controlled long term data on changes in body fat distribution are not yet available, it is interesting to note that peripheral fat loss and lipodystrophy have not been observed on atazanavir-containing HAART regimens at up to 48-week treatment (Haerter et al., 2004
).
Finally, the data suggest several candidate genes and pathways as targets for further exploration in genotyping and pharmacogenomic analysis of susceptibility to dyslipidemia, lipodystrophy, and related metabolic disturbances in HIV. Together with work by others, our findings support a unifying hypothesis that protease inhibitors induce ER stress through proteasome inhibition, resulting in contrasting effects on lipogenic pathways in adipocytes and hepatocytes depending on the cell-specific degree of glucose transport inhibition. Together, these processes would contribute to excessive hepatic lipid production but diminished storage of fat in peripheral subcutaneous adipose tissue and may explain clinical observations of dyslipidemia, insulin resistance, and fat redistribution.
| Footnotes |
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ABBREVIATIONS: HIV, human immunodeficiency virus; HAART, highly active antiretroviral therapy; GLUT, glucose transporter; SREBP, sterol regulatory element binding protein; ER, endoplasmic reticulum; UPR, unfolded protein response; DMSO, dimethyl sulfoxide; suc-LLVY-amc, succinyl-Leu-Leu-Val-Tyr-7-amino-4-methylcoumarin; FPLC, fast-performance liquid chromatography; RT-PCR, real-time polymerase chain reaction; hsp/HSP, heat shock protein; C/EBP homologous protein; GADD, growth arrest and DNA-damage inducible; ATF, activating transcription factor; MG132, N-benzoyloxycarbonyl (Z)-Leu-Leu-leucinal; PEPCK, phosphoenolpyruvate carboxykinase; FAS, fatty acid synthase; PPAR, peroxisome proliferator-activated receptor.
Address correspondence to: Dr. Rex A. Parker, Metabolic and Cardiovascular Discovery Biology, Bristol-Myers Squibb Pharmaceutical Research Institute,311Pennington-RockyHillRd.,Pennington,NJ08534.E-mail: rex.parker{at}bms.com
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