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Department of Cardiovascular/Metabolic Disease, Schering Plough Research Institute, Kenilworth, New Jersey
Received June 12, 2006; accepted September 27, 2006
| Abstract |
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Although ezetimibe was discovered and developed in the absence of a known molecular target, the ability of the drug to block intestinal cholesterol absorption provided strong evidence favoring a protein-mediated cholesterol absorption mechanism over a passive diffusion model. The decade-long search for the target of ezetimibe recently culminated with the identification of the protein Niemann-Pick C1 Like-1 (NPC1L1) as a critical mediator of sterol absorption, regulator of whole-body cholesterol homeostasis, and molecular target of ezetimibe (Altmann et al., 2004
; Davis et al., 2004
; Garcia-Calvo et al., 2005
).
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| Materials and Methods |
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| NPC1L1 Binding Assays |
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Radioligand. Binding of [3H]SCH60663 to membranes from cells expressing NPC1L1 was measured using a filtration binding assay (Garcia-Calvo et al., 2005
). Reactions were performed in binding buffer (5 mM HEPES, 5.5 mM glucose, 117 mM NaCl, and 5.4 mM KCl, pH 7.4) Cell membranes (50 µgin20 µl) were added to each well. Thereafter,[3H]SCH60663 (20 nM, 20 µl) was added to each well. Compounds (20 µl) were then added to the wells as indicated in the figure legends. Nonspecific binding was determined by including unlabeled SCH60663 (100 µM) in the binding reaction. Binding reactions were incubated for 2 h at 37°C. Samples were transferred to Unifilter-96 GF/C plates (PerkinElmer Life and Analytical Sciences, Boston, MA) and filtered using a Brandel harvester (Gaithersburg, MD). The plates were washed several times with cold (4°C) wash buffer (120 mM NaCl, 0.1% sodium cholate, and 20 mM MES, pH 6.7) and dried. Liquid scintillant (50 µl; Microscint-20, PerkinElmer) was added, and the bound radioactivity was measured using a microplate scintillation counter.
Short-Term Cholesterol Absorption Assay. [14C]cholesterol absorption was determined immediately in rats using conditions described previously (van Heek et al., 1997
). [14C]cholesterol was obtained from PerkinElmer Life and Analytical Sciences (Boston, MA; 40-60 mCi/mmol). Compounds were dissolved in rat bile and delivered (1.0 ml) intraduodenally by bolus injection via an intestinal catheter, followed by 1.0 ml saline rinse (0.9%). After a 30-min incubation, a cholesterol emulsion containing 3 mg of cholesterol and 2 µCi [14C]cholesterol (3 ml) was delivered to each rat as a bolus via intestinal catheter followed by 1 ml of saline rinse. Animals were killed 90 min later, and [14C]cholesterol levels in plasma, liver, intestinal contents, and intestinal wall were determined.
| Results |
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40, are highly conserved across all species and are suggestive of a highly constrained structure. Several cysteine residues are located within predicted transmembrane helices 1, 6, and 9 with the potential of fixing these transmembrane helices in close proximity. The proposed protein topology defined by the predicted transmembrane helices is consistent with the location of the putative N-linked glycosylation sites, which reside in three large extracellular loops exposed to the intestinal lumen. Figure 1 presents a ball model of the predicted membrane topology of human NPC1L1 (Iyer et al., 2005
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The rodent family consisting of sequences from hamster, rat, and mouse also exhibit nearly 90% identity in amino acid sequences. In contrast, primates and rodents share only 77 to 78% amino acid sequence identity with each other. The homology of canine NPC1L1 compared with the other species is less (74-81%), as is bovine (75-81%). Likewise, rabbit NPC1L1 exhibits only 75 to 79% homology to the other species examined. A phylogenetic tree representing the homology of NPC1L1 in the various species is shown in Fig. 2B. As expected, canine and rabbit NPC1L1 are more divergent compared with both primate and rodent families.
To understand the physiological impact of the NPC1L1 sequence diversity among species, binding characteristics of ezetimibe (SCH58235) and its glucuronidated metabolite (SCH60663) to the NPC1L1 orthologs of several species are examined in this study. Stable HEK-293 cell lines expressing human, rhesus monkey, canine, rat, hamster, rabbit, or mouse NPC1L1 cDNA were derived and used in subsequent experiments. The saturation binding curves of a fluorescently labeled (BODIPY) ezetimibe glucuronide (SCH354909) to each species NPC1L1 ortholog (except mouse) are shown in Fig. 3. The calculated Kd values are as follows: monkey, 46 nM; hamster, 49 nM, canine, 52 nM; rat, 58 nM; human, 61 nM; and rabbit, 151 nM. SCH354909 binding to mouse NPC1L1 could not be detected despite demonstrable expression of mouse NPC1L1 in HEK-293 cells by Western blot analysis (data not shown).
In an effort to detect binding to mouse NPC1L1, several related ezetimibe analogs were examined as possible alternatives to SCH354909 in the binding assay. The compound SCH610396, which is a fluorescently labeled synthetic precursor for SCH354909 (Burnett et al., 2002
), was identified as a viable option for detection of mouse NPC1L1 binding. SCH610396 contains a methyl ester substitution for the carboxylic acid on the glucuronide portion of the molecule (compound structures shown in Fig. 4A). Saturation binding analysis with SCH610396 (Fig. 4B) demonstrates binding to mouse NPC1L1 with a Kd value of 118 nM.
Binding affinities at each species NPC1L1 ortholog were determined for both SCH58235 and SCH60663 (Figs. 3 and 4C). The calculated Ki values are listed in Table 1 (columns 1 and 2) and are compared with in vivo ED50 values derived for each species tested (column 3). Divergence in the affinities of SCH58235 and SCH60663 for NPC1L1 is consistently observed across species. For all species tested, the affinity of SCH60663 for NPC1L1 is greater than that of SCH58235 (compare columns 1 and 2). Against monkey NPC1L1, the difference in affinity of these two compounds is most obvious at nearly 10-fold, whereas the difference in affinity is less than 3-fold against rabbit or mouse NPC1L1. Rank-order species affinity for SCH58235 is (monkey, dog, rat) > hamster > (human and rabbit) >> mouse. The rank-order species affinity for SCH60663 is slightly modified with monkey > dog > (rat and hamster) > (human and rabbit) >> mouse. In comparison, the rank order of in vivo potency of ezetimibe among species is monkey > dog > (rat and hamster) >> mouse. It should be noted that after oral administration, 90% of ezetimibe is glucuronidated, thereby converting SCH58235 to SCH60663. Therefore, the predominant form of ezetimibe present at the site of action in vivo (NPC1L1 in the jejunum) is the glucuronide SCH60663.
Expanding the study to several other ezetimibe analogs supports the observation that NPC1L1 binding correlates with in vivo cholesterol-lowering activity. Ezetimibe analogs that exhibit in vivo cholesterol-lowering activity (SCH61159, SCH60481, and SCH58832) and analogs that display no in vivo cholesterol-lowering activity (SCH60179 and SCH50032) were evaluated for binding to NPC1L1 orthologs of multiple species. The compound structures and the Ki values at each species NPC1L1 are listed in Table 2. In vivo data measuring the ability of each compound to lower cholesterol levels in plasma and liver in hamster are also provided for comparison in Table 2. The three active compounds exhibit variable affinity when evaluated against each species of NPC1L1 with the rank order of affinity among species similar to that of SCH58235 and SCH60663. Higher affinity is observed at monkey, dog, and rat NPC1L1 and lower affinity at human and rabbit NPC1L1 with affinity for hamster NPC1L1 somewhat intermediate. In comparison, the affinities of the compounds are markedly lower at mouse NPC1L1. Compounds that lack in vivo efficacy exhibit no detectable binding to NPC1L1 orthologs from any of the species tested. These data demonstrate that compound binding to NPC1L1 correlates with in vivo activity. Prediction of the extent of in vivo potency is confounded by metabolic parameters after oral administration. Glucuronidation of SCH58235 produces a metabolite (SCH60663) with higher affinity for NPC1L1. Similar metabolism may affect related compounds. The ability to generate metabolites with high affinity for NPC1L1 will affect overall in vivo responsiveness. The key determinant of in vivo efficacy is the ability of the predominant compound metabolite to bind to NPC1L1. Minor changes in compound structure or NPC1L1 amino acid sequence can profoundly affect binding affinity and consequently in vivo efficacy.
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An example of the effects of small modifications on the binding affinity of related compounds for NPC1L1 is provided by comparison of the binding characteristics of SCH610396 and SCH354909. The Kd value of [3H]SCH60663 was determined for both human and monkey NPC1L1 in saturation binding assays (Fig. 5, A and B). Kd values of 206 nM for human and 102 nM for monkey are consistent with previously reported values of 220 and 41 nM, respectively (Garcia-Calvo et al., 2005
). Competition binding studies using [3H]SCH60663 were performed to derive Ki values for SCH354909 and SCH610396 at both human NPC1L1 (Fig. 5C) and monkey NPC1L1 (Fig. 5D). The Ki value of SCH354909 at human NPC1L1 is calculated to be 455 and 272 nM at monkey NPC1L1. In comparison, the Ki value of SCH610396 is calculated to be 107 and 65 nM at human and monkey NPC1L1, respectively. The results demonstrate that the small modification of substituting the methyl ester for the carboxylic acid on the glucuronide increases the affinity for human NPC1L1 (more than 4-fold). This further illustrates that small variations in ezetimibe-related compounds can cause diverse binding interactions. Likewise, diversity in NPC1L1 also affects the binding interaction, as demonstrated by the differences in binding among species orthologs. Given the data demonstrating the correlation between NPC1L1 binding affinity and in vivo efficacy, the binding interaction between compounds and NPC1L1 is a major determinant regulating in vivo responsiveness.
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| Discussion |
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Intraduodenal delivery of SCH58235 leads to significant levels of the compound detected in portal plasma of which >95% is the glucuronide SCH60663 after first-pass metabolism in the intestine. Traveling from portal plasma to the liver and back to the intestine via bile, SCH60663 is redelivered to the site of action where it accumulates in the intestinal lumen (van Heek et al., 2000
). Although both SCH58235 and SCH60663 bind to NPC1L1, the binding affinity of SCH60663 is greater than that of SCH58235 in all species examined, consistent with the stronger potency of SCH60663 observed in in vivo efficacy studies (van Heek et al., 2000
). The compounds differ in affinity by as much as 10-fold in monkey and as little as 2-fold in mouse (Table 1), but the rank order of potency is similar for both compounds (monkey, rat, dog, and hamster > human and rabbit > mouse) and correlates well with animal efficacy studies (Table 1). These data indicate that compound potency is primarily dictated by the binding affinity of the compound for NPC1L1 of a particular species. However, the rate and efficiency of glucuronidation in each species also probably contribute to the diversity in species responsiveness to oral administration of ezetimibe given the binding differential between SCH58235 and SCH60663. Indeed, compound metabolism may be a critical factor in determination of ezetimibe potency in species that exhibit the highest degree of separation between SCH58235 and SCH60663 binding affinities and that are particularly responsive to ezetimibe treatment in vivo (e.g., monkey). The UDP-glucuronosyltransferase enzyme(s) responsible for glucuronidating SCH58235 in humans was identified (Ghosal, 2004
); however, little comparative information is available for this enzyme or related enzymes across multiple species.
Another factor that may affect in vivo activity of 2-azetidinones is the interaction of associated proteins with the compounds and NPC1L1. We have shown previously that SCH354909 and SCH58235 bind to scavenger receptor class B, type I (SR-BI) with relatively high affinity (Altmann et al., 2002
). SR-BI has been suggested to play a role in cholesterol transport (Hauser et al., 1998
), and its expression in the intestine is restricted to enterocytes similar to NPC1L1. Furthermore, SCH58235 blocks SR-BI-mediated cholesterol uptake in Chinese hamster ovary cells. However, studies in SR-BI knockout mice clearly demonstrate SCH58235 is still efficacious in vivo despite no SR-BI expression. Although NPC1L1 has been established as the molecular target of ezetimibe, SR-BI may also have limited effects on the in vivo efficacy among various species because SR-BI may be associated with cholesterol transport and can bind to 2-azetidinones. Analysis of the ability of species orthologs of SR-BI to bind various 2-azetidinones is beyond the scope of the present study.
Changes in compound structure clearly affect NPC1L1 binding ability (Table 2). Glucuronidation of SCH58235 after oral administration (forming SCH60663) enhances NPC1L1 binding and improves in vivo potency. In contrast, the addition of a protective second glucuronide group to the first glucuronide moiety (SCH61159) causes the Ki value to revert to that observed for the nonglucuronidated form. It has been reported previously that hydroxylation of the 3-phenylpropyl side chain improves in vivo potency of this class of compounds (Clader et al., 1996
; Burnett, 2004
). Consistent with that conclusion, compounds that lack the hydroxyl group at the 3-phenylpropyl side chain exhibit decreased (SCH58832) or total loss (SCH60179 and SCH50032) of NPC1L1 binding activity.
Even small alterations in compound structure or NPC1L1 can influence NPC1L1 binding. In Fig. 5, binding of SCH354909 and SCH610396 to human and monkey NPC1L1 are compared. SCH354909 is BODIPY-labeled SCH60663 and differs from SCH610396 only by a substitution of a methyl ester for the carboxylic acid on the glucuronide moiety (Fig. 4A) (Burnett, 2004
). Consistent with other ezetimibe analogs, both SCH354909 and SCH610396 exhibit stronger affinity for monkey NPC1L1 compared with human NPC1L1. The substitution of the methyl ester on the glucuronide in SCH610396 confers higher affinity (>4-fold) to both human and monkey NPC1L1.
Noting that the substitution of the methyl ester (SCH610396) for the carboxylic acid (SCH354909) causes a functional shift from acidic to neutral pH, it is tempting to speculate which amino acids in human and monkey NPC1L1 are responsible for mediating the observed diversity in responsiveness to these compounds. Residues located in the transmembrane helices and extracellular loops have often been associated with drug binding and make for probable candidates (Strader et al., 1995
). Comparison of monkey and human NPC1L1 yields 36 residues within these regions that differ between the two species. Amino acid substitutions leading to qualitative changes from lipophilic to basic and hydrophilic are predicted to be of particular interest. Studies using chimeric proteins or point mutations will shed light on this issue. Analysis of coding single nucleotide polymorphisms may provide additional understanding of critical amino acids within the NPC1L1 protein. Intestinal cholesterol absorption studies in humans have shown wide individual variation in both cholesterol absorption and responsiveness to ezetimibe (Sudhop et al., 2002
). Defining the ezetimibe binding pocket in NPC1L1 will aid in the development of the next-generation cholesterol absorption inhibitors and provide some rationale for nonresponsive individuals.
The data in this study demonstrate that the ability of ezetimibe analogs to bind to NPC1L1 critically factors into the determination of in vivo efficacy. There is wide diversity in responsiveness to ezetimibe among several species that have been tested. Comparison of the binding affinities of several ezetimibe analogs demonstrates that there is a strong correlation between NPC1L1 binding affinity and the ability of compounds to affect cholesterol absorption in vivo. Other factors such as variations in bioavailability and the pharmacokinetic/pharmacodynamic properties of compounds within specific species also affect the overall responsiveness to ezetimibe therapy. The ability of the predominant compound metabolite present at the jejunal site of action to bind to NPC1L1 is the major determinant of in vivo responsiveness.
| Footnotes |
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-D-glucuronic acid; SCH58235, 1-(4-fluorophenyl)-3(R)-[3(S)-hydroxy-3-(4-fluorophenyl)propyl)]-4(S)-(4-hydroxyphenyl)-2-azetidinone; SCH61159, 1-O-[4-[trans-(2S,3R)-1-(4-fluorophenyl)-4-oxo-3-[3(S)-hydroxy-3-(4-fluorophenyl)propyl]-2-azetidinyl]phenyl-L]-3-O-(
-D-glucopyranosyl)-
-D-glucopyranose; SCH604813, (R)-[3-(4-fluorophenyl)-3(S)-hydroxypropyl]-4(S)-(4-hydroxyphenyl)-1-(4-iodophenyl)-2-azetidinone; SCH58832, trans-1-(4-fluoropheny)-3-[[2-(4-fluoropheny)-2-oxoethyl]thio]-4-(4-hydroxyphenyl)-2-azetidinone; SCH60179, 1-O-[4-[trans-(3R,4S)-1-(4-methoxyphenyl)-2-oxo-3-(3-phenylpropyl)-4-azetidinyl]phenyl]-2,3,4,6-tetra-O-(phenylmethyl)-
-D-glucopyranose; SCH50032, rel-(3R,4S)-4-(4-fluorophenyl-L)-1-(4-mehtoxyphenyl)-3-(3-phenylpropyl)-2-azetidinone; SCH354909, 1-O-[4-[1-[4-[3-[[3-(4,4-difluoro-5,7-dimethyl-4-bora-3a,4a-diaza-S-indacen-3-yl)-1-oxopropyl]amino]-1-propynyl]phenyl]-3(R)-[3(S)-hydroxy-3-(4-fluorophenyl)propyl]-2-oxo-4(S)-azetidinyl]phenyl]-
-D-glucopyranuronic acid; SCH610396, 1-O-[4-[1-[4-[3-[[3-(4,4-difluoro-5,7-dimethyl-4-bora-3a,4a-diaza-S-indacen-3-yl)-1-oxopropyl]amino]-1-propynyl]-phenyl]-3(R)-[3(S)-hydroxy-3-(4-fluorophenyl)propyl]-2-oxo-4(S)-azetidinyl]phenyl]-
-D-glucopyranuronic acid, methyl ester.
The online version of this article (available at http://molpharm.aspetjournals.org) contains supplemental material. ![]()
Address correspondence to: Dr. Brian Hawes, K15-3600, 2015 Galloping Hill Road, Kenilworth, NJ 07033. E-mail: brian.hawes{at}spcorp.com
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