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Department of Lead Generation, AstraZeneca Pharmaceuticals, Wilmington, Delaware
Received August 11, 2006; accepted December 15, 2006
| Abstract |
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In the current investigation, the mode of action for osanetant in the Ca2+ mobilization assay was investigated, and the result was compared with that for talnetant. To provide clues as to whether the antagonists bind at different sites on NK3, the patterns of competition binding for both compounds with orthosteric ligand and one another were studied using ligand cross-competition, a novel mechanistic probe to study receptor antagonists. Kinetics of binding for both of the NK3 antagonists were also measured to provide insights into the time-dependence and reversibility of the binding reactions.
| Materials and Methods |
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Radioligand Filter Binding Assays. Filter radioligand binding assays, performed in 96-well polypropylene U-bottomed plates with a final assay volume of 200 µl, were run in 50 mM Tris-HCl, pH 7.4, containing 4 mM MnCl2 (powder added fresh before assay), 1 mg/ml BSA, 10 µM thiorphan (3-mercapto-2-benzylpropanoylglycine), 1% dimethyl sulfoxide, and membranes of CHO cells overexpressing human recombinant NK3 receptor at a final total membrane protein concentration of 10 µg/ml. Assay solutions were incubated at room temperature (22°C) on a plate shaker for 1 h unless specified otherwise, followed by filtration through a 96-well filter-bottomed plate (Unifilter GF/C; PerkinElmer Life and Analytical Sciences) pretreated with 0.5% BSA to capture the radioligand-receptor binding complex. The captured binding complex was then washed with 4x 300 µl/well wash buffer (20 mM Tris-HCl, pH 7.0, containing 0.2 mg/ml BSA) to remove unbound radioligand. After the filter-bottomed plates were dried in air for >4h, 40 µl/well scintillant was added, and the plates were then sealed and read on a TopCount scintillation counter (PerkinElmer Life and Analytical Sciences) to quantify bound radioligand.
For radioligand saturation binding, the isotope concentration was varied between 0 and 20 nM for [3H]SB222200 and between 0 and 1.25 nM for 125I-[MePhe7]NKB. A binding assay in the absence of receptor was also performed for each isotope concentration used to provide a background control for that particular isotope concentration. For competition binding, in assays with [3H]SB222200 or [3H]SR142801 as the radioligand, the isotope was added at a final concentration of 1 nM unless specified otherwise. For assays using 125I-[MePhe7]NKB, the final isotope concentration was set at 0.1 nM. In competition binding, 2 µl of dimethyl sulfoxide solution of a test compound (simple competition binding) or two compounds (ligand cross-competition, see below) at specified final concentrations was first added to assay plates followed by the addition of 198 µl of buffer containing all other assay components to initiate ligand competition. In studying kinetics of radioligand binding for determining association rate constants, radioligand and receptor were mixed at varied times between 0 and 120 min before filtration, whereas in measuring dissociation rate constants, radioligand and receptor were mixed and incubated for >20 min before a 10-fold dilution into a buffer solution containing the homologous nonradioactive ligand at a concentration >10,000 x Kd value.
Scintillation Proximity Assay. SPAs, run only with 125I-[MePhe7]NKB as the radioligand, were performed under the same assay conditions as in the filter-binding assay, except that 1.5 mg/ml SPA beads were included. The beads were presoaked in the assay buffer for
10 min before the addition of other assay components.
Ca2+ Mobilization Assay. Stably transfected CHO cells overexpressing human recombinant NK3 were plated into poly(D-lysine) coated 384-well plates at a concentration of 10,000 cells/well in UltraCulture media (Cambrex Bio Science Walkersville, Inc.) with 2 mM L-glutamine. The cells were incubated overnight at 37°C with 5% CO2. The next day, cell media were aspirated from the cell plate, and 25 µl of Fluo-4/acetoxymethyl ester solution at a final concentration of 4.4 µM Fluo-4 in assay buffer (15 mM HEPES, pH 7.4, Hanks' balanced salt solution, and 2.5 mM probenecid) was added to each well. After being incubated at 37°C for 1 h, the cell plate was washed twice to remove excess dye, leaving behind fresh assay buffer. After the addition of antagonist at various concentrations to the cell plate and preincubation with cells at room temperature (22°C) for 10 min, senktide was added by the fluorometric imaging plate reader instrument. Immediately thereafter, measurements of the fluorescent intensity were taken every second for 1 min, with the laser set at 0.60 W and the exposure length at 0.40.
Theory of Ligand Cross-Competition. Inhibitor cross-competition has been used in determining the mode of action between enzyme inhibitors (Tian et al., 2003
; Knappenberger et al., 2004
). However, there have been no reports describing its application in receptor binding. Analogous to an enzyme assay, ligand cross-competition would measure effects on binding of radioligand (A) (i.e., radiolabeled agonist), by two receptor ligands (I1 and I2) (i.e., antagonists) present in the assay simultaneously. In the current study, the ternary complex model with a single orthosteric binding site was used as the basis for developing the theory for ligand cross-competition, assuming that each of the two competition partners binds to receptor (R) noncompetitively with regard to one another and to the orthosteric radioligand as shown in Scheme 1. In this scheme, Kd, Ki(1), and Ki(2) are constants for dissociation of binary complexes RA, RI1, and RI2, respectively,
,
, and
are cooperativity factors for the formation of ternary complexes RAI1, RAI2, and RI1I2, respectively, and
is the cooperativity factor responsible for the formation of the tertiary complex RAI1I2. The size of each cooperativity factor determines the apparent mode of action of the antagonist for a particular binding step with which the cooperativity factor is associated. The greater the size the cooperativity factor is, the more competitive the antagonist would be with regard to the other ligand involved in that particular binding step. For example, two ligands are strictly competitive if the cooperativity factor is approaching infinity but purely noncompetitive if the cooperativity factor is unity. Therefore, to determine the mode of action of an antagonist is to assess the size of the cooperativity factors associated with its binding reactions. This requires an analytical description of the system. For the system shown in Scheme 1, the solution is given by the following equation (see Appendix):
![]() | (1) |
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Derived assuming noncompetitive binding for all the binding equilibriums involved, eq. 1 is the most general solution for describing ligand cross-competition and is a relatively complicated function to use. For certain cases, it can be reduced. If the mode of action of one antagonist (i.e., I1) with regard to the orthosteric ligand is competitive (
,
), the solution becomes
![]() | (2) |
In a special case in which the nonradioactive homologous ligand is one (I1) of the competition partners, the radioligand (A) and the homologous ligand (I1) would be indistinguishable mechanistically and must be competitive (
,
). Their thermodynamic properties are also likely to be very close (
), if not identical. As a result, the solution for such a "homologous" ligand cross-competition can be approximated by eq. 3:
![]() | (3) |
If both I1 and I2, are competitive against A (
,
,
), the solution is further reduced to
![]() | (4) |
Finally, if both I1 and I2, are competitive against A and also competitive against one another (
,
,
,
), the system is the simplest for ligand cross-competition, with the solution given by eq. 5:
![]() | (5) |
These various scenarios may be distinguished by analyzing data according to eqs. 1 to 5. In the case where both competition partners are competitive with the orthosteric ligand, whether the two competition partners are competitive with one another may also be determined graphically by reciprocal plots. For example, the reciprocal of eq. 5 describing competitive binding is given by
![]() | (6) |
![]() | (7) |
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![]() | (8) |
IC50 values from competition binding by antagonist (I) were determined by subtracting the background counts (wells with 100 nM [MePhe7]NKB), determining the percentage of bound (%B) relative to the maximum wells (those in the absence of antagonist), and then fitting %B as a function of antagonist concentration according to eq. 9:
![]() | (9) |
Dose-response from Ca2+ mobilization assays generated in the presence of antagonist were fit to the following equation to determine apparent EC50 value:
![]() | (10) |
![]() | (11) |
Assuming a simple, one-step reversible binding mechanism and the presence of ligand in excess of receptor ([A] » [R]), data (B, bound radioligand) from association kinetic radioligand binding at various times, t, were fit to the following equation:
![]() | (12) |
is the relaxation time for reaching equilibrium, which is given by
![]() | (13) |
![]() | (14) |
![]() | (15) |
To determine whether temporal effects played a role in observed Schild slope from the Ca2+ mobilization assay, the following nonequilibrium Schild equation (Kenakin, 1980
) was used in data analysis:
![]() | (16) |
| Results |
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As shown in Fig. 3, talnetant displayed a linear Schild plot with slope close to unity (1.3 ± 0.2; Table 1) and a pA2 of 8.82. This value translates into an apparent Kb of 1.5 nM, a value of the same magnitude as the Ki (5 nM, data not shown) as determined in radioligand competition binding. These results are consistent with data from previous reports (Sarau et al., 1997
; Giardina et al., 1999
) suggesting competitive binding of talnetant with regard to the orthosteric ligand. In contrast, osanetant showed a steep Schild (
, Fig. 4B) with a slope far from unity (3.3 ± 0.3) and a pA2 of 7.94 (Table 1), which is equivalent to an apparent Kb value of 12 nM, a value significantly greater than its IC50 (0.8 nM; data not shown) as determined in radioligand competition binding. The discrepancy between binding and functional potencies, and the observed abnormal Schild, suggested a more complicated mode of action for osanetant.
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Osanetant Shares Similar Binding Kinetics with SB22220 and Talnetant. To determine association kinetics, [3H]osanetant was mixed with receptor for various times followed by filtration through a filter plate to quantify bound radiolabel. For dissociation kinetics, receptor and [3H]osanetant were preincubated for 20 min, diluted into a large excess of unlabeled ligand, and the amount of radioligand remaining bound at various times was followed by filtration. As shown in Fig. 5A, both association and dissociation of radiolabeled osanetant seemed to follow a monotonic process, indicating a simple one-step binding mechanism. Complete dissociation of bound radioligand occurred after the 20-min preincubation, indicating reversible binding under these conditions. To determine whether irreversible binding would only occur after a longer time of association, the dissociation kinetics were performed with a longer preincubation. As shown in Fig. 5B, preincubation at up to 2 h did not appreciably perturb the dissociation kinetics of osanetant, ruling out slow onset of irreversible binding. The apparent first-order rate constant kon[A] and kon and koff (Table 2) were then obtained by analyzing data according to eqs. 12 to 15 assuming a one-step reversible binding. Similar kinetic results were obtained with 125I-[MePhe7]NKB and [3H]SB222200 (Fig. 5A and Table 2), a close derivative of talnetant (Fig. 1). The dissociation kinetics for talnetant was assessed by a "hot-chase" isotope exchange procedure in which preformed bound species were diluted into assay buffer containing 125I-[MePhe7]NKB, allowing binding of the radiolabel to the receptor as a result of dissociation of talnetant (Fig. 5C). The apparent rate constant for association of 125I-[MePhe7]NKB was then taken as the apparent dissociation constant for talnetant. The true dissociation constant for talnetant might have been underestimated by this approach (i.e., limited by the rate of radiolabel association of 0.16 min1; Table 2) for this value was comparable with the apparent dissociation rate constant of talnetant so determined (0.13 min1, Table 2). As shown in Table 2, the rate constant for association, kon, for osanetant (0.23 nM1 · min1) is very close to that (0.13 nM1 · min1) determined for SB222200, a close derivative of talnetant (Table 1). The koff values (0.03 min1, osanetant; 0.07 min1, SB222200; 0.13 min1, talnetant; Table 2) are also similar for the three antagonists. These results indicate that the kinetic profile of osanetant is similar to those of talnetant and its derivative SB222200.
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Prolonged Preincubation of Osanetant Does Not Improve the Aberrant Schild in the Ca2+ Mobilization Assay. Schild analysis of osanetant in the Ca2+ mobilization assay was repeated with longer preincubation times to investigate further the question of inadequate antagonist-receptor interaction as the reason for the aberrant Schild slope observed with osanetant (3.3, Table 1). As shown in Fig. 4B, the Schild plots at 30 (
) and 50 (
) min of preincubation times were almost identical with the one obtained with the 10 min preincubation (
), with the slopes being 3.1 and 2.9 (Table 1), respectively, for plots obtained at the 30- and 55-min preincubation. These values were comparable with the slope of 3.3 obtained with the 10-min preincubation. Likewise, the pA2 values were 8.0 in both cases, a value not significantly different from 7.9 (Table 1) observed with the 10-min preincubation. These data indicate that the aberrant Schild observed with the 10-min preincubation cannot be improved by extending the preincubation time.
Data Analysis Using the Temporal Schild Equation Yields Very Small Kb and k2 Values. The data of dose ratio against osanetant concentration from the Ca2+ mobilization assay could also fit reasonably well according to the temporal equation (eq. 16) for Schild (Kenakin, 1980
), as shown in Fig. 4C. However, this analysis yielded very small values for Kb (8, 4, and 10 pM, respectively, for 10-, 30-, or 55-min preincubation) and k2 (6.3 x 105, 9.8 x 106, and 1.3 x 105 min1, respectively, for 10-, 30-, or 55-min preincubation), making it difficult to reconcile with values determined in direct kinetic (koff of 3.0 x 102 min1, Table 2), competition ligand binding (IC50 = 0.8 nM; data not shown), and ligand cross-competition (Ki = 0.20.6 nM; Table 3) studies.
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Talnetant and Osanetant Bind Competitively with Regard to [MePhe7]NKB and to Each Other. Ligand cross-competition examines how the copresence of two ligands (i.e., two antagonists) would affect the binding of the orthosteric ligand (i.e., the agonist). This method (see Theory of Ligand Cross-Competition), in principle, allows the prediction of whether the two cross-competition partners are competitive or noncompetitive with regard to one another. In practice, varying concentrations of two ligands ([I1] and [I2]) are insufficient to solve simultaneously four cooperativity factors (
,
,
, and
) according to eq. 1. It is more practical if the mechanism of binding for each antagonist with regard to the orthosteric ligand has already been solved, reducing the total number of cooperativity factors that needs to be estimated from four to two (
and
). This can be achieved by ligand cross-competition by first using the homologous ligand with each antagonist and applying eq. 4, where only one cooperativity factor (
) needs to be calculated.
SPA binding using 125I-[MePhe7]NKB as the radioligand was used first for ligand cross-competition studies. Saturation binding yielded a Kd value of 0.9 nM (data not shown) for 125I-[MePhe7]NKB. Cross-competition with the homologous ligand [MePhe7]NKB for osanetant and then with talnetant was subsequently carried out using 0.1 nM 125I-[MePhe7]NKB. Fitting data according to eq. 3 yielded a large
value for the homologous cross-competition with either osanetant or talnetant (Table 3), and the corresponding reciprocal plots were linear and parallel (Figs. 6, A and B), indicating that each antagonist binds to NK3 competitively with regard to the homologous ligand [MePhe7]NKB. Subsequent heterologous ligand cross-competition studies between osanetant and talnetant, assuming competitive binding of each with regard to [MePhe7]NKB (eq. 4), also produced a large
value (Table 3) and linear parallel reciprocals (Fig. 6C), indicating competitive binding between the two antagonists as well. Similar results (large
values, Table 3, and linear parallel reciprocals, Fig. 7) were obtained using [3H]SB222200 as the radioligand for both homologous and heterologous ligand cross-competition. The Ki values for [MePhe7]NKB, talnetant, osanetant, and SB222200 determined from these ligand cross-competition experiments were all similar to their respective Ki values as measured independently in radioligand competition binding assays (data not shown). Taken together, these data strongly suggest that osanetant and talnetant bind at the same pocket within the orthosteric binding site on NK3, resulting in the observed competitive binding patterns for osanetant and talnetant with regard to the orthosteric ligand and between themselves.
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| Discussion |
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What causes osanetant to behave functionally differently from talnetant? To address this question, several possibilities may be considered. First of all, the observed steep slope in Schild analysis of osanetant in Ca2+ mobilization (Fig. 4) can be explained if equilibrium is not attained at lower concentrations of antagonist. As such, at low concentrations of antagonist, the time to reach equilibrium would be long, resulting in partial binding and, therefore, underestimated antagonist potency, skewing the Schild slope upward (Kenakin, 1980
; Lutz and Kenakin, 1999
). Consistent with this hypothesis, several reports have demonstrated the slow onset of and long-lasting functional effects by osanetant (Nguyen-Le et al., 1996
; Beaujouan et al., 1997
), raising the possibility that the binding kinetics for osanetant might indeed be quite different from talnetant, involving slow on- and off-rates or functionally irreversible binding steps.
To investigate this possibility, kinetic binding assays were performed with osanetant, and the results were compared with those obtained with talnetant and its close derivative SB222200, which has also been demonstrated to show normal Schild behavior as talnetant in Ca2+ mobilization (Sarau et al., 2000
). As shown in Table 2, the kinetic parameters displayed by osanetant are quite similar to those obtained for talnetant (Table 2). In particular, the kon of 0.23 nM1 · min1 (Table 2) for osanetant would translate into a t1/2 of only 0.3 min for antagonist binding even at the lowest concentration (10 nM) of osanetant used in the Schild analysis. That such a short half-life is sufficient for equilibration with a 10-min preincubation in Ca2+ mobilization, together with the fact that the kinetic profiles for talnetant and osanetant are very similar, does not support the hypothesis of slow onset of binding as the cause for the observed aberrant Schild for osanetant.
However, it can be argued that the kinetic properties displayed in binding assays may be different from those in functional assays because of differences in assay conditions such as pH, temperature, ionic strength, viscosity, etc. Thus, a molecule displaying normal kinetic properties in binding may behave in a different way in functional assays as a result of the changes in assay conditions, leading to nonequilibrium conditions in the functional assays. If this were indeed the case, longer preincubation of cells with osanetant would have improved the abnormal Schild. The fact that the aberrant Schild observed for osanetant remains unchanged by longer preincubation (Fig. 4B) argues against the idea of inadequate equilibration as the reason for the steep Schild slope in the cell-based Ca2+ mobilization assay.
Potential time effects may also be evaluated using Schild incorporating a time-component according to eq. 16 (Kenakin, 1980
). This temporal Schild equation assumes that the equilibration is not diffusion-controlled but rather is limited by antagonist-receptor interaction. Allowing this time-component would, in principle, lead to improved estimate of the true Kb value for steep Schild plot if indeed the onset of antagonism is slow. Although analysis by applying this temporal equation can adequately describe the "steep" Schild plot for osanetant (Fig. 4C), in this case, it seems to overestimate the potency of osanetant, yielding Kb values of 8, 4, and 10 pM, respectively, for 10-, 30-, or 55-min preincubation, values much less than the IC50 of 0.8 nM from competition binding or the Ki of 0.2 to 0.6 nM (Table 3) from ligand cross-competition.
Second, it is conceivable that the abnormal Schild plot observed with osanetant in the Ca2+ mobilization assay, as described in the current investigation and in other functional assays reported previously (Emonds-Alt et al., 1995
; Nguyen-Le et al., 1996
; Beaujouan et al., 1997
; Medhurst et al., 1997
), reflects a binding mechanism different from that of talnetant. The results from kinetic (Fig. 5 and Table 2) and cross-competition binding studies (Figs. 6 and 7 and Table 3) are consistent with osanetant and talnetant binding in a similar one-step binding mechanism at the same site, a site within the orthosteric binding domain, arguing against a mechanism of binding as the reason for the observed aberrant Schild.
However, these data from kinetic and cross-competition studies are not in themselves conclusive evidence. Homology modeling based on the high-resolution X-ray crystal structure of rhodopsin has been used to provide insights into the ligand binding sites of all three neurokinin receptors (Giolitti et al., 2000
; Blaney et al., 2001
; Pieper et al., 2002
) and in conjunction with site-directed mutagenesis and pharmacophore analysis (Evers and Klebe, 2004
; Meini et al., 2004
) to help understand the nature of the interactions between neurokinin receptors and antagonists. Although a homology model of NK3 docked with talnetant has been described previously (Blaney et al., 2001
), pharmacophore modeling using shape similarity or point-matching did not identify sufficient common pharmacophore features between talnetant and osanetant (C. Alhambra, unpublished data), suggesting low probability for binding of talnetant and osanetant at the same site on the receptor through an identical set of interactions. This pharmacophore analysis does not rule out the possibility that the two antagonists bind to the same pocket on the receptor via different sets of interactions or have partially overlapping binding sites on the receptor. Both scenarios are consistent with the observed competitive ligand cross-competition while allowing room for differential functional effects to arise from distinct interactions of the two antagonists occupying their respective partially overlapping sites. To unequivocally demonstrate overlapping binding sites would require the application of a structural approach, such as X-ray crystallography or affinity labeling.
Finally, a competitive ligand in binding may not necessarily show competitive antagonism in functional assays if the coupling between binding and function can be perturbed by certain antagonists to become nonlinear and/or multiphasic. This possibility cannot be ruled out for NK3 antagonists because little is known about the structure of the orthosteric site and quantitative nature of its interaction with the components of downstream signaling pathways.
Several features of ligand cross-competition make it an attractive mechanistic probe to investigate the mechanism of action of pharmacological compounds. This method allows the use of relatively low concentrations of radioligand, thereby circumventing the limitation for Schild type analysis whenever high-background radioligand binding is a problem. In addition, ligand cross-competition allows one to evaluate the mode of action of different compounds (for example, novel leads identified by various screening approaches) without having to radiolabel the compounds themselves (assuming a radiolabeled orthosteric ligand is available). Although designed primarily to investigate modes of action between multiple drug molecules, the mechanism of binding of a drug molecule with regard to orthosteric ligand can be readily determined through homologous ligand cross-competition. Perhaps most importantly, cross-competition studies can be performed with ligands that have affinity too weak for use as radioligands. Thus, ligand cross-competition analysis can be used to determine whether two weak affinity novel lead compounds are competitive with one another and therefore whether overlapping structure-activity relationships should be anticipated, because structural changes are designed into the leads during optimization toward higher-affinity compounds. Finally, this method is not limited to binding assays; in cases in which the coupling between binding and function is linear or their relationship can be analytically defined, one should be able to use ligand cross-competition to investigate the mechanism of interaction between two drug molecules in functional assays.
| Appendix: Derivation of Equation 1 for Ligand Cross-Competition |
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![]() | (18) |
![]() | (19) |
![]() | (20) |
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![]() | (22) |
![]() | (23) |
![]() | (24) |
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![]() | (29) |
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| Acknowledgements |
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| Footnotes |
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ABBREVIATIONS: NK, neurokinin; NKB, neurokinin B; BSA, bovine serum albumin; D2, dopamine receptor 2; SPA, scintillation proximity assay; CHO, Chinese hamster ovary.
Address correspondence to: Dr. Gaochao Tian, AstraZeneca Pharmaceuticals, 1800 Concord Pike, Wilmington, DE 19803. E-mail: gaochao.tian{at}astrazeneca.com
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P. Malherbe, C. Bissantz, A. Marcuz, C. Kratzeisen, M.-T. Zenner, J. G. Wettstein, H. Ratni, C. Riemer, and W. Spooren Me-Talnetant and Osanetant Interact within Overlapping but Not Identical Binding Pockets in the Human Tachykinin Neurokinin 3 Receptor Transmembrane Domains Mol. Pharmacol., June 1, 2008; 73(6): 1736 - 1750. [Abstract] [Full Text] [PDF] |
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