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Pharmacogenetics Section, Laboratory of Reproductive and Developmental Toxicology, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, North Carolina
Received October 25, 2007; accepted January 17, 2008
| Abstract |
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Signal transduction is proposed as an alternative mechanism regulating CAR nuclear translocation, because okadaic acid repressed the nuclear accumulation of CAR in PB-treated mouse primary hepatocytes, suggesting the involvement of protein phosphatases (Kawamoto et al., 1999
; Yoshinari et al., 2003
). CAR forms a protein complex with the 90-kDa heat shock protein and cytoplasmic CAR retention protein in cytoplasm, and PP2A is recruited upon activation by PB (Kobayashi et al., 2003
; Yoshinari et al., 2003
). To retain CAR in cytoplasm, a signaling pathway including extracellular signal-regulated kinase 1/2 plays an important role (Koike et al., 2007
). Furthermore, Ser202 dephosphorylation was reported to be required for mouse CAR translocation into the nucleus (Hosseinpour et al., 2006
). In this context, the elucidation of how xenobiotics transmit the signal triggering CAR nuclear translocation is of the highest priority. Using yeast two-hybrid screening, we identified proteins that bound to CAR and found a member of the family of regulatory subunits for serine/threonine protein phosphatase 1 (PPP1R16A or abbreviated as R16A). This mouse protein was originally reported as an interacting protein of PP1 in yeast two-hybrid screening and named MYPT3 (Skinner and Saltiel, 2001
) based on its homology with members of the myosin phosphatase targeting subunit (MYPT) family. Although liver is one of multiple mouse tissues that express R16A, hepatic function of R16A is not known.
Here, we first characterized R16A as a membrane-associated protein. Because transformed cells, including HepG2 cells, which are generally used to investigate the translocation mechanism, lack the proper regulation of CAR translocation, fluorescent resonance energy transfer (FRET) and mammalian two hybrid assays were performed directly in mouse livers to investigate the role of R16A in the nuclear translocation of CAR. We here present the experimental consideration that PB elicits signal transduction at the membrane to initiate the translocation of CAR to the nucleus.
| Materials and Methods |
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Yeast Two-Hybrid Screening. Matchmaker Gal4 two-hybrid system cDNA library from mouse liver (Clontech, Mountain View, CA) was screened using hCAR L342A/pAS2-1 as bait. We chose to use this mutant as bait for the following reasons: 1, the equivalent mutation in mouse CAR, L352A, abolishes its constitutive transactivation activity (Choi et al., 1997
); 2, In its reported three-dimensional structure, the hCAR ligand binding domain formed a complex with RXR and the SRC-1 peptide (Xu et al., 2004
), Leu342 exists near the SRC-1 peptide. Based on 1 and 2, we anticipated that the hCAR L342A mutant would have less affinity with the SRC-1 type coactivators. Thus using this mutant may provide less of a chance to reclone coactivators already reported by others in our yeast two-hybrid screening. Four of a total of 53 positive clones from 1.6 x 107 primary transformants matched in sequence with MYPT3/PPP1R16A (Skinner and Saltiel, 2001
) (Gene Bank accession number NM_033371
[GenBank]
).
Plasmids and Antibodies. The plasmids hCAR/pEYFP-c1, hCAR/pECFP-c1 and (NR1)5pGL3-tk were described previously (Kawamoto et al., 1999
; Zelko et al., 2001
). The following newly constructed plasmids were used in this report. R16A full-length coding cDNA cloned into pCDNA3.1/V5-His TOPO (Invitrogen, Carlsbad, CA); pEYFP-c1 and pECFP-c1 (Clontech); pBind and pAct (Promega, Madison, WI); and pNTAP-B (Stratagene, La Jolla, CA). Human PP1β cDNA cloned into pGEX4T-3 (GE Healthcare, Chalfont St. Giles, Buckinghamshire, UK); pECFP-c1. Human CAR cDNA cloned into pGEX4T-3. All deletion mutants and site directed mutants were constructed using QuikChange site-directed mutagenesis kit (Stratagene) with proper primers. To produce the R16A antiserum, bacterially expressed GST-R16A fusion protein was purified by glutathione-Sepharose (GE Healthcare) and was injected to immunize rabbits. The other antibodies used in this article were: anti-caveolin (BD Transduction Laboratories, San Jose, CA,), anti-tubulin
(Santa Cruz Biotechnology, Santa Cruz, CA), anti-lamin β (Santa Cruz), PP1
(Santa Cruz), anti-PP1β (Santa Cruz), and anti-PP1
(Santa Cruz).
GST Pull-Down Assay. R16A protein was expressed using the TNT-coupled reticulocyte lysate system (Promega) and pcDNA3.1/R16A. The in vitro-translated 35S-labeled R16A was incubated with GST-hCAR-fusion protein on a glutathione resin at room temperature for 30 min. The resin was washed four times with HEPES-NaOH buffer, pH 7.6, 0.1 M NaCl, 0.1% Triton X-100, and the 35S-labeled R16A bound to the resin was separated on a NuPAGE Novex 4-12% Bis-Tris Gel (Invitrogen) and detected by autoradiography (Kobayashi et al., 2003
).
Immunohistochemistry. Frozen mouse liver sections were subjected to immunofluorescent staining using anti-R16A serum (1:100 dilution) and Alexa Fluor 555 goat anti-rabbit IgG (Invitrogen). Fluorescent images of the sections were captured with a confocal Zeiss LSM 510 microscope. Nuclei in the liver sections were stained with Hoechst S33258.
Cell Fractionation and Western Blot. Mouse livers were homogenized in 10 mM HEPES-NaOH buffer, pH 7.6, containing 0.25 M sucrose and complete protease inhibitor cocktail (Roche). The cell membrane fraction was prepared as previously reported (Koike et al., 2005
). For cytosolic fraction, the 100,000g supernatant of liver homogenates was used. The nuclear extract was prepared as previously reported (Gorski et al., 1986
; Honkakoski et al., 1998
). For Western blot analysis, proteins were separated on a NuPAGE Novex 4-12% Bis-Tris Gel, and the R16A protein on the PVDF membrane was detected with rabbit anti-R16A serum.
Expression of Fluorescent Protein-Tagged Protein in Liver and Acceptor Photobleaching FRET Analysis. Using the tail vein injection method (Zelko et al., 2001
; Sueyoshi et al., 2002
), protein was expressed in mouse liver for 8 h with or without PB treatment. Liver frozen sections were prepared, and expressed yellow fluorescent (YFP) and cyan fluorescent (CFP) fusion proteins were visualized under a confocal Zeiss LSM510 microscopy system (Carl Zeiss, Thornwood, NY). For acceptor photobleaching FRET analysis, excited signals (at 458 nm) from 5 µm confocal slices were captured twice before and twice after YFP photobleaching (25 pulses of laser at 514 nm) with a 40x oil immersion objective (1.3 numeric aperture). Emissions of CFP and YFP were collected simultaneously using a META spectral detector (Zeiss) in the range of 450 to 540 nm (Squires et al., 2004
). Subsequently, the YFP and CFP emisions were extracted via linear unmixing using software provided by Zeiss. Dequenching of CFP was quantified for multiple liver cells, and FRET efficiency E was calculated with the equation E = 1 - (Ii/Ii0), where Ii is fluorescence intensity before the bleaching and Ii0 is that after the bleaching (Harpur and Bastianens, 2001
). Distances between CFP and YFP were estimated from this efficiency E and equation E = R06/(R06 + R6), where R (nanometers) is the actual distance between the centers of the fluorophores and R0 (nanometers) is the distance at which energy transfer efficiency E is 50%. R0 was reported to be 4.9 nm for CFP donor and YFP acceptor combination (Harpur and Bastianens, 2001
). A conventional fluorescent microscope (Axioplan; Zeiss, Welwyn Garden City, UK) equipped with specific filter sets for CFP and YFP was employed for counting cell numbers showing differential distribution of YFP-tagged CAR by coexpression of CFP-tagged R16A and its deletion mutants as described in the previous report (Hosseinpour et al., 2006
).
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-cyano-hydroxycinnamic acid. Mass spectrometry (MS) and tandem mass spectrometry (MS/MS) were then performed with the use of an Applied Biosystems 4700 Proteomics Analyzer in the positive ion and reflector modes. The MS was calibrated internally using autolytic tryptic peptides, and the MS/MS was calibrated externally using the fragment ions of the angiotensin IM+H ion (m/z 1296.68). A focus mass of m/z 2000 was used for the MS acquisition. For the MS/MS, 1000 V was used for the collision energy, and argon was used as the collision gas with a recharge threshold set at 1.0 x 10-7 torr. Protein identification was then performed by interrogating both MS and MS/MS using the MASCOT search engine and the entire NCBI nonredundant database. Search parameters included an allowance of two missed tryptic cleavages, a 0.06-Da mass tolerance for the MS data, a 0.1-Da mass tolerance for the MS/MS data, and an allowance for variable oxidation of methionine residues. Western blotting for the same purified materials was performed using anti-PP1
, anti-PP1β, and anti-PP1
from Santa-Cruz. Mammalian Two-Hybrid Assay. CheckMate Mammalian Two-Hybrid System (Promega) was used. HepG2 cells were transfected with pG5-Luc, R16A in pBind, and R16A and its deletion mutants in pAct. After 48 h of incubation, firefly luciferase activities from pG5-Luc reporter normalized against Renilla reniformis luciferase activities of pBind were determined using the Dual-Luciferase Assay System (Promega, Madison, WI). The same sets of the plasmids were injected via the tail vein using TransIt In Vivo Gene Delivery System (Mirus, Madison, WI). Liver homogenates were prepared in Passive Lysis Buffer (Promega) at 16 h after the DNA injection and luciferase activity was determined.
Phosphatase assay. Protein phosphatase activities of GST-PP1β were assayed using the Protein Serine/Threonine Phosphatase Assay System (New England Biolabs, Ipswich, MA) by following the manufacturer's protocol. Each reaction mixture contains 5 µl of PP1β on the resin and varying amounts of R16A and 10 µM myelin basic protein phosphorylated by PKA and [32P]ATP. After 20-min incubation at 30°C, radioactivity in trichloroacetic acid-soluble supernatant was measured by scintillation counting.
| Results |
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, RXRβ, and corepressors clones. The deduced amino acid sequences of the four positive clones were identical to the previously reported MYPT3, a regulatory subunit of PP1 (Skinner and Saltiel, 2001
R16A Induced CAR Nuclear Translocation. When expressed alone in mouse livers in vivo, CFP-CAR was primarily localized in the cytoplasm and accumulated into the nucleus only after PB induction (Fig. 2A) as previously reported (Zelko et al., 2001
; Wang et al., 2004
; Xia and Kemper, 2005
; Hosseinpour et al., 2006
). By injecting expression plasmids via the tail vein, YFP-tagged R16A and CFP-tagged CAR were coexpressed in mouse livers (Fig. 2B). As expected, YFP-R16A was localized to the cell membrane in a similar manner to that observed in Fig. 1A by R16A antiserum. It is noteworthy that cells coexpressing R16A and CAR displayed accumulation of CAR in the nucleus and colocalization of CAR and R16A on the cell membrane. This CAR nuclear localization observed without PB treatment of mice is similar with CAR localization in PB treated mouse liver in Fig. 2A, right, and very different from the localization in control mouse liver in Fig. 2A, left.
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R16A Closely Associated with CAR on Liver Membrane. Given the fact that R16A can interact with CAR in yeast cells and the GST pull-down analysis results in Fig. 1C, CAR and R16A may be interacting in the liver in vivo at the colocalization sites on the cell membranes observed in Fig. 2B. To examine this interaction, acceptor photobleaching FRET analysis was performed between YFP-R16A and CFP-CAR using liver cells expressing these two proteins. As illustrated in Fig. 2C, when CFP molecule is excited by a laser at 458 nm, both CFP and YFP fluoresce if these two molecules are close enough to each other so that FRET from CFP to YFP occurs. CFP emission is partially quenched because a part of its excited energy is used to produce YFP emission. After photobleaching YFP (the FRET acceptor molecule in this experimental set up) using 514 nm laser, CFP emission becomes stronger (donor dequenching effect), because there is no energy transfer between the donor and acceptor molecules. The proteins were visualized before and after photobleaching of YFP fusion protein in the area shown with a red square in Figs. 2C and a magnified image of this area was shown in Fig. 2D. The intensity of the CFP-CAR fluorescence in randomly selected areas on the cell membrane (Fig. 2D, area 1-3) increased concomitantly with the decrease of that from YFP-R16A. Quantitative analysis of the CFP-CAR dequenching by YFP-R16A photobleaching was shown in Fig. 2D, bottom. In comparison, CFP-CAR intensity localized in the nuclei was not changed by photobleaching (Fig. 2D, area 4). Similar analysis of YFP and CFP fluorescent intensity on the membranes of more than 10 cells revealed that the FRET efficiency between YFP-16A and CFP-CAR was 61 ± 11%. FRET efficiency E was calculated with the equation E = 1 - (Ii/Ii0), where Ii is CFP-CAR fluorescence intensity before the bleaching of YFP-R16A and Ii0 is that of after the bleaching (Harpur and Bastianens, 2001
). Using a R0 = 4.9 nm, the distance at which energy transfer efficiency is 50% in ideal conditions for CFP donor and YFP acceptor (Harpur and Bastianens, 2001
), the distance between the two tags was estimated to be 4.6 ± 0.36 nm. This distance can be even smaller given the fact that FRET can be less effective depending on the orientations of dipoles and the environment of the fluorescent dyes. Although the results do not establish the direct interaction of the two molecules, the results are consistent with the hypothesis that R16A and CAR are directly interacting on the membrane, considering that their estimated radii from molecular weight of these proteins using the equation for globular proteins, r = 6.76 x 10-2 MW1/3, are 2.3 and 2.6 nm, respectively.
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304-513, R16A
304-403, and R16A
404-513 (Fig. 4A). In the mammalian two-hybrid assay, R16A
403-513 strongly interacted with R16A, although the degree of the interaction was approximately 60% of the R16A-R16A interaction, whereas R16A
304-403 exhibited a weak interaction with R16A and R16A
304-513 showed no interaction. Thus, the intermolecular interaction resides in the middle of the R16A molecule including the 304-403 region.
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304-513, R16A
304-403, or R16A
404-513 to analyze its intracellular localization (Fig. 4B). Of more than 100 cells counted, 80% retained CAR in the cytoplasm if it was expressed alone. When CAR was coexpressed with R16A, 70% of cells predominantly localized CAR in the nucleus, and another 10% showed CAR localized equally in the nucleus and cytoplasm. The coexpression of the R16A303-524 greatly increased the number of cells localizing CAR to the nucleus, whereas that number was not increased when the R16A1-303 was coexpressed. With respect to deletion mutants, R16A
304-513 did not alter the cytoplasmic localization of CAR. In the case of R16A
304-403, a slight decrease of cytoplasmic CAR localization inversely correlated with a similar increase of the receptor in the nucleus, suggesting the weak ability of R16A
304-403 to nuclear translocate CAR. The strongest CAR nuclear translocation activity was observed with R16A
404-513 (Fig. 4B); nearly 40% decrease in cytosolic localization was replaced by a 30% increase in predominantly nuclear localization. The order of strength of R16A and its deletion mutants in translocation of CAR into the nucleus was: R16A = R16A304-524 > R16A
404-513 >> R16A
304-403 > 16A
304-513 = R16A1-303. This order was identical to the strength of the intermolecular interaction of R16A and its mutants as seen in mammalian two-hybrid assay, thus correlating the interaction with the CAR nuclear translocation in mouse livers.
If, in fact, R16A regulates xenobiotic-induced nuclear translocation of CAR, R16A should be able to form the interaction in response to xenobiotics. To obtain evidence for PB-elicited interaction of R16A, a mammalian two-hybrid assay was performed in mouse livers, in which pBind-R16A and pAct-R16A were coinjected into mice via the tail vein and the mice were treated with PB. The livers were removed, homogenized, and subjected to luciferase assay. PB treatment increased luciferase activity by 3-fold, indicating that it enhanced the interaction of R16A molecules (Fig. 5). Likewise, R16A304-524 also increased the interaction with R16A after PB treatment. In contrast, when pBind-R16A
304-513, which lacks the region responsible for the interaction, was coinjected with pAct-R16A, PB treatment did not enhance their interaction. In a control experiment, R16A showed no interaction with Gal4 DBD and VP16 activation domain, either before or after PB treatment. In non-PB-treated animals, pBind-R16A and pAct-R16 cotransfection gave 1.5- to 2.0-fold higher reporter activity than that of the two negative controls using R16A expression vectors and empty vectors. The weak basal R16A dimerization in mouse liver nuclei is consistent with the R16A dimerization on the liver cell membrane observed by FRET analysis in Fig. 3. The degree of interactions detected by these two methods can not be directly compared because of the very different nature of these two methods. The results indicate that PB can increase the interaction of R16A molecules in mouse liver.
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or anti-PP1
antibodies did not. The results overall established specific interaction of PP1β and R16A. Next we analyzed PP1β activity modulation by R16A. PP1β activity was effectively inhibited (more than 60%) by R16A protein expressed in bacteria as GST fusion protein (Fig. 6B). We also analyzed the inhibition by mutant R16A (F67A and F69A double mutation), which has a mutated PP1 interaction consensus sequence identified in a previous report (Skinner and Saltiel, 2001
PP1β Inhibited CAR Translocation by PB. To analyze PP1β effect on PB-induced CAR nuclear translocation, CFP-tagged PP1β was coexpressed in liver cells with YFP-tagged CAR, and the CAR localization change by PB was analyzed. As reported previously (Zelko et al., 2001
; Hosseinpour et al., 2006
), without PB, less than 20% of the cells show exclusively nuclear YFP-hCAR localization, and PB treatment increased this value to nearly 70%. Active PP1β coexpression increased CAR nuclear localization slightly without drug treatment. With PB, however, YFP-hCAR translocation into nucleus was strongly inhibited by the coexpression (Fig. 7A). In contrast, mutated PP1β, in which the active center histidine was replaced by alanine (PP1βH124A), has no effect on translocation. To evaluate the effect of PP1β inhibition of CAR nuclear translocation against the receptor's transactivation activity, we next examined CAR activity in the liver using a NR1 reporter gene (Fig. 7B). The NR1 reporter has been well established to be activated by CAR (Kawamoto et al., 1999
; Sueyoshi et al., 1999
). Mouse livers were transfected with (NR1)5pGL3-tk reporter with PP1β or its active site mutant. The reporter was activated by PB at approximately 3.5-fold. This activation was strongly inhibited by active PP1β coexpression, and the no PB activation was observed. Meanwhile, PP1β active site mutant H124A showed no effect on reporter activation by PB treatment. Thus, these results were consistent with PP1β's effect on CAR translocation.
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| Discussion |
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R16A was originally identified as a PP1
catalytic subunit interacting protein (Skinner and Saltiel, 2001
) in yeast two hybrid screening and named MYPT3 based on the similarity with MYPT proteins. R16A consists of 524 amino acid residues, in which five Ankyrin repeats and a consensus PP1 binding site are located within the N-terminal 300 amino acid residues. The C-terminal region with 224 residues contains two possible Src homology 3 binding sites and a prenylation motif (CaaX). These structural features suggest that R16A could be a scaffold protein regulating protein-protein interactions as well as cellular signaling. Our results demonstrated membrane localization of this protein. Furthermore, deletion mutants that retain the CaaX motif were distributed on the membrane, but deletion mutants that lacked this motif were not (data not shown) suggesting that the CaaX motif is in fact farnesylated to localize the molecules on the cell membrane in liver. R16A shows a highly specific interaction with PP1β, which is one of the three PP1 catalytic subunits in humans, PP1
, PP1β (also called PP1
), and PP1
. These are extremely homologous proteins, with 88% amino acid identity between PP1β and PP1
and 87% between PP1β and PP1
. Consistent with our results, similar specific interaction between R16A and PP1β has been reported quite recently using His-tagged R16A expressed in COS-7 cells (Yong et al., 2006
). In Drosophila melanogaster, orthologous proteins of mammalian R16A and PP1β specifically interact with each other (Vereshchagina et al., 2004
). From these facts, we postulated that PP1β might have effects on CAR nuclear translocation and NR1 reporter activation. Indeed, as shown in Fig. 4, PP1β activity was inhibitory for the translocation and activation of the reporter. A recent report established that PKA phosphorylation of R16A could affect inhibitory activity for PP1β (Yong et al., 2006
). Upon PKA phosphorylation, R16A intermolecular interactions were significantly reduced, and it became an activator for PP1β. Furthermore, suggested phosphorylation sites are localized in the region that is critical for dimerization (Ser340, Ser341, and Ser353 in human R16A). Thus, how PKA regulates R16A dimerization for PP1β activity modulation in PB induced CAR translocation and activation is an area for further study.
Collectively, R16A widens our insight into understanding the induction mechanism by xenobiotics and may lead us one step closer to the initial site of PB action. An increasing number of CAR activators such as phenytoin are now included with those displaying the same activation characteristics as PB (Jackson et al., 2004
; Wang et al., 2004
). The other xenosensing nuclear receptor PXR has also been reported to translocate into the nucleus in response to an activator (Kawana et al., 2003
; Squires et al., 2004
), and preliminary results suggested this receptor also interacts with R16A (data not shown). Because PXR and CAR are activated by numerous xenobiotics, including therapeutic drugs and environmental pollutants, affecting drug toxicity and drug-drug interactions (Honkakoski and Negishi, 2000
; Xie and Evans, 2001
; Willson and Kliewer, 2002
; Honkakoski et al., 2003
), R16A may provide us with a novel candidate as target of the xenobiotics that can modulate the function of these receptors.
| Acknowledgements |
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| Footnotes |
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ABBREVIATIONS: CAR, constitutive active/androstane receptor; PB, Phenobarbital; FRET, fluorescent resonance energy transfer; YFP, yellow fluorescent protein; CFP, cyan fluorescent protein; R16A, PPP1R16A; PP2A, protein phosphatase 2A; MYPT, myosin phosphatase targeting subunit; PP1, protein phosphatase 1; NR1, nuclear receptor 1; DBD, DNA binding domain; TAP, tandem affinity purification; PKA, protein kinase A; PXR, pregnane X receptor; NE, nuclear extract.
Address correspondence to: Dr. Tatsuya Sueyoshi, Pharmacogenetics section, Laboratory of Reproductive and Developmental Toxicology, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC 27709. E-mail: sueyoshi{at}niehs.nih.gov
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