TABLE 3

Structural statistics for the ensemble of Tp1a structures

NMR distance and dihedral statistics
 Distance constraints
  Total349
  Intraresidual (׀i-j׀ = 0)168
  Sequential (׀i-j׀ = 1)100
  Medium range (׀i-j׀ ≤ 4)36
  Long range (׀i-j׀ ≥ 5)45
 Hydrogen bonds (for 12 H-bonds)24
 Dihedral angles
  φ19
  χ118
Structure statistics
 Violations
  Distance constraints (> 0.2 Å)0
  Dihedral angle constraints (> 2°)0
 Energies (kcal/mol, mean ± S.D.)
  Overall−1145 ± 36
  Bond13.4 ± 1.1
  Angles35.7 ± 2.8
  Improper12.4 ± 2.0
  vdw−155.0 ± 5.9
  NOE (experimental)0.068 ± 0.018
  cDih (experimental)0.13 ± 0.15
  Dihed150.6 ± 1.9
  Elec−1202 ± 42
 RMS deviation from idealized geometry
  Bond length (Å)0.0104 ± 0.00043
  Bond angles (°)1.08 ± 0.98
  Impropers (°)1.07 ± 0.96
 Average pairwise root mean square deviationa (Å)
  Heavy1.50 ± 0.30
  Backbone0.73 ± 0.25
 MOLPROBITY
  Clash score, all atomsb5.5 ± 3.2
  Poor rotamers0.8 ± 0.6
  Ramachandran favored (%)98.2 ± 2.3
  Ramachandran allowed (%)1.93 ± 2.31
  Ramachandran outliers (%)0 ± 0
  Molprobity score1.63 ± 0.34
  Molprobity score percentilec88.2 ± 8.7
  Cβ deviations, bad backbone bonds/angles0 ± 0
  • cDih, experimental dihedral angles; Dihed, dihedral angles; Elec, electrostatics; NOE, nuclear overhauser effect; RMS, root mean square; vdw, van der Waals.

  • a Pairwise root mean square deviation from 20 refined structures over residues 2–29.

  • b Number of steric overlaps (>0.4 Å) per 1000 atoms.

  • c One hundred percent is the best among structures of comparable resolution, 0% is the worst.