Skip to main content

SLIC: A Method for Sequence- and Ligation-Independent Cloning

  • Protocol
  • First Online:

Part of the book series: Methods in Molecular Biology ((MIMB,volume 852))

Abstract

We describe here a method for sequence- and ligation-independent cloning (SLIC). SLIC uses an exonuclease, T4 DNA polymerase, to generate single-stranded DNA overhangs in insert and vector sequences. These fragments are then assembled in vitro and transformed into Escherichia coli to generate recombinant DNA of interest. SLIC inserts can also be generated by incomplete PCR (iPCR) or mixed PCR. As many as five inserts can be assembled in one reaction simultaneously with great efficiency using SLIC. SLIC circumvents sequence constraints for recombinant DNA using standard restriction enzyme-mediated cloning and previous ligation-independent cloning methods and provides a new approach for the efficient generation of recombinant DNA.

This is a preview of subscription content, log in via an institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Smith HO, Wilcox KW (1970) A restriction enzyme from Hemophilus influenzae. I. Purification and general properties. J Mol Biol 51:379–391

    Google Scholar 

  2. Danna K, Nathans D (1971) Specific cleavage of simian virus 40 DNA by restriction endonuclease of Hemophilus influenzae. Proc Natl Acad Sci USA 68:2913–2917

    Article  PubMed  CAS  Google Scholar 

  3. Cohen SN, Chang AC, Boyer HW, Helling RB (1973) Construction of biologically functional bacterial plasmids in vitro. Proc Natl Acad Sci USA 70:3240–3244

    Article  PubMed  CAS  Google Scholar 

  4. Backman K, Ptashne M (1978) Maximizing gene expression on a plasmid using recombination in vitro. Cell 13:65–71

    Article  PubMed  CAS  Google Scholar 

  5. Liu Q, Li MZ, Liebham D, Cortez D, Elledge SJ (1998) The univector plasmid fusion system, a method for rapid construction of recombinant DNA without restriction enzymes. Current Biology 8:1300–1309

    Article  PubMed  CAS  Google Scholar 

  6. Hartley JL, Temple GF, Brasch MA (2000) DNA cloning using in vitro site-specific recombination. Genome Res 10:1788–1795

    Article  PubMed  CAS  Google Scholar 

  7. Walhout AJ et al (2000) GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes. Methods Enzymol 328:575–592

    Article  PubMed  CAS  Google Scholar 

  8. Aslanidis C, de Jong PJ (1990) Ligation-independent cloning of PCR products (LIC-PCR). Nucleic Acids Res 18:6069–6074

    Article  PubMed  CAS  Google Scholar 

  9. Haun RS, Servanti IM, Moss J (1992) Rapid, reliable ligation-independent cloning of PCR products using modified plasmid vectors. Biotechniques 13:515–518

    PubMed  CAS  Google Scholar 

  10. Li MZ, Elledge SJ (2005) MAGIC: An in vivo genetic method for the rapid construction of recombinant DNA molecules. Nat Gen 37:311–319

    Article  CAS  Google Scholar 

  11. Li MZ, Elledge SJ (2007) Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC. Nat Methods 4:251–256

    Article  PubMed  CAS  Google Scholar 

  12. Amundsen SK, Smith GR (2003) Interchan-geable parts of the Escherichia coli recombination machinery. Cell 112:741–744

    Article  PubMed  CAS  Google Scholar 

  13. Kuzminov A (1999) Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda. Microbiol Mol Biol Rev 63:751–813

    PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Stephen J. Elledge .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2012 Springer Sceince+Business Media, LLC

About this protocol

Cite this protocol

Li, M.Z., Elledge, S.J. (2012). SLIC: A Method for Sequence- and Ligation-Independent Cloning. In: Peccoud, J. (eds) Gene Synthesis. Methods in Molecular Biology, vol 852. Humana Press. https://doi.org/10.1007/978-1-61779-564-0_5

Download citation

  • DOI: https://doi.org/10.1007/978-1-61779-564-0_5

  • Published:

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-61779-563-3

  • Online ISBN: 978-1-61779-564-0

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics