Mitochondria make a come back

https://doi.org/10.1016/S0169-409X(01)00123-5Get rights and content

Abstract

This review attempts to summarize our present state of knowledge of mitochondria in relation to a number of areas of biology, and to indicate where future research might be directed. In the evolution of eukaryotic cells mitochondria have for a long time played a prominent role. Nowadays their integration into many activities of a cell, and their dynamic behavior as subcellular organelles within a cell and during cell division are a major focus of attention. The crystal structures of the major complexes of the electron transport chain (except complex I) have been established, permitting increasingly detailed analyses of the important mechanism of proton pumping coupled to electron transport. The mitochondrial genome and its replication and expression are beginning to be understood in considerable detail, but more questions remain with regard to mutations and their repair, and the segregation of the mtDNA in oogenesis and development. Much emphasis and a large effort have recently been devoted to understand the role of mitochondria in programmed cell death (apoptosis). The understanding of their central role in mitochondrial diseases is a major achievement of the past decade. Finally, various drugs have traditionally played a part in understanding biochemical mechanisms within mitochondria; the repertoire of drugs with novel and interesting targets is expanding.

Introduction

Progress in understanding the structure and function of mitochondria has been quite steady since their definite identification and isolation almost 50 years ago, and if there is talk about a ‘comeback’, one should primarily consider that they have come back into fashion and into the more fashionable journals. What are the reasons for the renewed interest in this organelle?

There is certainly the discovery that a diverse group of neurological and muscular diseases can be classified under the heading of ‘mitochondrial diseases’, because partially defective electron transport and oxidative phosphorylation are the root causes for such neuropathies and myopathies (see article by T. Pulkes and M.G. Hanna in this issue). In a broader sense, mitochondrial deficiencies accumulating with time are implicated in diseases such as Parkinson’s disease, Alzheimer’s disease, diabetes mellitus, and aging in general. It has become clear that mitochondria play a central role in apoptosis, or programmed cell death. This process is important for normal events in the development of a complex organism as well as for abnormal events such as tumorigenesis.

The discovery of mtDNA as the ‘24th chromosome’ has made mitochondria interesting to molecular biologists and geneticists and greatly expanded previous fields such as biochemistry and biophysics. A large database of mitochondrial DNA sequences from many organisms is now available for addressing fundamental questions in anthropology, evolution, forensics, etc. (Table 1). Techniques involving recombinant DNA and transgenic cells and organisms have allowed very detailed analyses of the biogenesis of mitochondria. In combination with high resolution crystal structures the major complexes of the electron transport chain can now be investigated to relate structure to function and regulation.

Information about mitochondria can be presented under a variety of headings. The literature is vast, and an effort to cover the major findings in a single book was made by this author not so long ago [1]. The present article will follow a similar outline, but of necessity confine itself to a briefer summary of our present knowledge and understanding. Some of the major challenges and unsolved questions in the field will also be mentioned.

Section snippets

Evolution of eukaryotes

There is a widely accepted consensus that present day mitochondria represent the remnant of a prokaryotic organism that had become a partner in a symbiotic relationship with another cell early in the evolution of life on earth. Until recently the prevailing serial endosymbiont theory postulated the evolution of a proto-eukaryotic cell which then captured a proteo-bacterium by endocytosis. A symbiotic relationship then evolved over time, accompanied by the loss of redundant genes and the

Cristae structure

When mitochondria were first visualized in the electron microscope and their major structural features were elucidated, two competing models existed for a short time (Fig. 1). Both recognized the existence of an outer membrane and of a highly folded or convoluted inner membrane. However, in one model the cristae were interpreted as ‘baffle-like’ (Palade), while the other model described them as ‘septa-like’ (Sjostrand). The first model became the accepted model depicted in all the text books

Mitochondria and molecular genetics

Together with chloroplasts, mitochondria are unique as subcellular organelles with their own genome. Although the vast majority of the ∼1000 proteins of mitochondria are encoded by nuclear genes, 13 proteins are encoded by the circular mammalian mtDNA that are absolutely essential for respiration and oxidative phosphorylation. With some exceptions, the same genes are found on the mtDNA of most organisms, and mtDNA of other organisms (e.g., plants) contains some additional genes for

The electron transport chain — what problems remain?

Most readers will be familiar with the Krebs cycle and the electron transport chain (ETC). A major output from the Krebs cycle is NADH and it must be recycled. The ETC as a whole serves to oxidize NADH, with oxygen serving as the final electron acceptor (respiration). The complexity of the ETC (complexes I, III, IV, and complex II, if one includes the oxidation of succinate) is designed to make use of the considerable free energy released from the oxidation of NADH. A relatively early insight

Mitochondria and intermediary metabolism

The compartmentalization of the many different metabolic reactions in a cell is nowadays fully appreciated, i.e. a cell is no longer viewed simply as a bag of enzymes. Many of the pathways that are exclusive to mitochondria are well known: the Krebs cycle, the urea cycle, fatty acid oxidation, the biosynthesis of heme, and others [1]. While the individual steps and enzymes are well characterized and understood in diverse organisms, efforts continue to understand the control of these pathways,

Mitochondria and disease

With the discovery of mtDNA, it became apparent that this genome would be subject to mutations and, hence, mitochondrial mutations could be expected to result in recognizable phenotypes. These predictions were quickly verified for yeast. In mammals there are hundreds of mitochondria and thousands of mtDNAs per cell, and mitochondrial genetics becomes a problem of population genetics even in a single individual. Thus, for a phenotype resulting from a mitochondrial mutation to be recognized,

Mitochondria as targets for drugs

As implied by the title of this volume and many of its contributions, mitochondrial functions are potentially interesting targets for specific drugs, and the subject has had a long history. One can somewhat arbitrarily make distinctions between the following classes of drugs: (1) drugs that interfere with mitochondrial proliferation; (2) drugs that interfere with electron transport and oxidative phosphorylation; (3) drugs aimed at very specific enzymes in one of the many metabolic reactions in

Summary

Mitochondria probably represent the best example of our understanding of structure and biological function at a higher level of organization beyond that of single enzymes and simple membranes and compartments. Their structure as subcellular organelles is increasingly refined from electron microscopy. Our knowledge of the biogenesis of mitochondria is relatively far advanced with an emphasis on protein import and on the contribution of genetic information from two genomes. There is a beginning

References (219)

  • K.D. Lee et al.

    Phosphorylation of kinesin in vivo correlates with organelle association and neurite outgrowth

    J. Biol. Chem.

    (1995)
  • T.W. Gong et al.

    A novel mouse kinesin of the UNC-104/KIF1 subfamily encoded by the Kif1b gene

    Gene

    (1999)
  • Y. Tanaka et al.

    Targeted disruption of mouse conventional kinesin heavy chain, kif5B, results in abnormal perinuclear clustering of mitochondria

    Cell

    (1998)
  • L. Hicke et al.

    Ubiquitination of a yeast plasma membrane receptor signals its ligand-stimulated endocytosis

    Cell

    (1996)
  • D.L. Croteau et al.

    Mitochondrial DNA repair pathways

    Mutat. Res.

    (1999)
  • S.P. LeDoux et al.

    Repair of alkylation and oxidative damage in mitochondrial DNA

    Mutat. Res.

    (1999)
  • D.E. Sawyer et al.

    Repair of DNA damage in mitochondria

    Mutat. Res.

    (1999)
  • L. Bonen

    The mitochondrial genome: so simple yet so complex

    Curr. Opin. Genet. Dev.

    (1991)
  • R. Benne

    RNA editing: how a message is changed

    Curr. Opin. Genet. Dev.

    (1996)
  • L. Simpson et al.

    Sense from nonsense: RNA editing in mitochondria of kinetoplastid protozoa and slime molds

    Cell

    (1995)
  • V.L. Woriax et al.

    Nucleotide and aminoacyl-tRNA specificity of the mammalian mitochondrial elongation factor EF-Tu.Ts complex

    Biochim. Biophys. Acta Gene Struct. Expr.

    (1996)
  • Y.L. Zhang et al.

    Roles of residues in mammalian mitochondrial elongation factor Ts in the interaction with mitochondrial and bacterial elongation factor Tu

    J. Biol. Chem.

    (1998)
  • V.L. Woriax et al.

    Mechanistic studies of the translational elongation cycle in mammalian mitochondria

    Biochim. Biophys. Acta Gene Struct. Expr.

    (1997)
  • B.F.C. Clark et al.

    Prokaryotic and eukaryotic translation factors

    Biochimie

    (1996)
  • C.M. Koehler et al.

    How membrane proteins travel across the mitochondrial intermembrane space

    Trends Biochem. Sci.

    (1999)
  • M.F. Bauer et al.

    Protein translocation into mitochondria: the role of TIM complexes

    Trends Cell Biol.

    (2000)
  • N. Pfanner

    Mitochondrial import: crossing the aqueous intermembrane space

    Curr. Biol.

    (1998)
  • J.E. Walker et al.

    Sequences of 20 subunits of NADH:ubiquinone oxidoreductase from bovine heart mitochondria. Application of a novel strategy for sequencing proteins using the polymerase chain reaction

    J. Mol. Biol.

    (1992)
  • K. Hell et al.

    Identification of Cox20p, a novel protein involved in the maturation and assembly of cytochrome oxidase subunit 2

    J. Biol. Chem.

    (2000)
  • D.M. Glerum et al.

    COX15 codes for a mitochondrial protein essential for the assembly of yeast cytochrome oxidase

    J. Biol. Chem.

    (1997)
  • C. Church et al.

    Cloning and characterization of PET100, a gene required for the assembly of yeast cytochrome c oxidase

    J. Biol. Chem.

    (1996)
  • C.A. Yu et al.

    Structural basis of functions of the mitochondrial cytochrome bc1 complex

    Biochim. Biophys. Acta

    (1998)
  • D. Zaslavsky et al.

    Proton pumping by cytochrome oxidase: progress, problems and postulates

    Biochim. Biophys. Acta

    (2000)
  • D.A. Mills et al.

    Where is ‘outside’ in cytochrome c oxidase and how and when do protons get there?

    Biochim. Biophys. Acta

    (2000)
  • I.E. Scheffler, Mitochondria, Wiley, New York, 1999, pp....
  • M.W. Gray et al.

    Mitochondrial evolution

    Science

    (1999)
  • T. Vellai et al.

    The origin of eukaryotes: the difference between prokaryotic and eukaryotic cells

    Proc. R. Soc. London B: Biol. Sci.

    (1999)
  • A.J. Roger et al.

    A mitochondrial-like chaperonin 60 gene in Giardia lamblia: evidence that diplomonads once harbored an endosymbiont related to the progenitor of mitochondria

    Proc. Natl. Acad. Sci. USA

    (1998)
  • J.L. Boore

    Animal mitochondrial genomes

    Nucleic Acids Res.

    (1999)
  • L. Kenyon et al.

    Expanding the functional human mitochondrial DNA database by the establishment of primate xenomitochondrial cybrids

    Proc. Natl. Acad. Sci. USA

    (1997)
  • T. Dominko et al.

    Bovine oocyte cytoplasm supports development of embryos produced by nuclear transfer of somatic cell nuclei from various mammalian species

    Biol. Reprod.

    (1999)
  • J.F. O’Connell

    Genetics, archeology, and Holocene hunter-gatherers

    Proc. Natl. Acad. Sci. USA

    (1999)
  • A. Eyre-Walker

    How clonal are human mitochondria?

    Proc. R. Soc. London Ser. B

    (1999)
  • D.A. Merriweather et al.

    Mitochondrial recombination?

    Science

    (1999)
  • P. Gagneux et al.

    Mitochondrial sequences show diverse evolutionary histories of African hominoids

    Proc. Natl. Acad. Sci. USA

    (1998)
  • K. Owens et al.

    Genomic view of human history

    Science

    (1999)
  • P.L. Ivanov et al.

    Mitochondrial DNA sequence heteroplasmy in the Grand Duke of Russia Georgij Romanov establishes the authenticity of the remains of Tsar Nicholas II

    Nat. Genet.

    (1996)
  • P. Gill et al.

    Identification of the remains of the Romanov family

    Nat. Genet.

    (1994)
  • I.V. Ovchinnikov et al.

    Molecular analysis of Neanderthal DNA from the northern Caucasus

    Nature

    (2000)
  • C.A. Mannella

    Our changing views of mitochondria

    J. Bioenerg. Biomembr.

    (2000)
  • Cited by (115)

    • Mitochondrial dysfunction in reproductive and developmental toxicity

      2022, Reproductive and Developmental Toxicology
    • Respiration: Plant mitochondria - Substrates, inhibitors, uncouplers

      2021, Encyclopedia of Biological Chemistry: Third Edition
    View all citing articles on Scopus
    View full text