Rapid kinetic analysis of multichannel records by a simultaneous fit to all dwell-time histograms

Biophys J. 2000 Feb;78(2):785-99. doi: 10.1016/S0006-3495(00)76636-7.

Abstract

A method is presented for rapidly extracting single-channel transition rate constants from patch-clamp recordings containing signals from several channels. The procedure is based on a simultaneous fit of the observed dwell-time distributions for all conductance levels, using a maximum likelihood approach. This algorithm allows estimation of single-channel rate constants in cases where more advanced methods may be impractical because of their extremely long computational time. A correction is included for the limited time resolution of the recording system, according to theory developed by Roux and Sauvé (Biophys. J. 48:149-158, 1985), by accounting for the impact of undetected transitions on the dwell-time distributions, and by introducing an improved practical implementation of a fixed dead time for the case of more than one channel. This feature allows application of the method to noisy data, after filtering. A computer program implementing the method is tested successfully on a variety of simulated multichannel current traces.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Algorithms
  • Data Interpretation, Statistical
  • Electric Conductivity
  • Ion Channel Gating*
  • Kinetics
  • Markov Chains
  • Models, Theoretical
  • Patch-Clamp Techniques*
  • Software