Characterization of enzymatic processes by rapid mix-quench mass spectrometry: the case of dTDP-glucose 4,6-dehydratase

Biochemistry. 2000 Nov 14;39(45):13633-40. doi: 10.1021/bi001963d.

Abstract

The single-turnover kinetic mechanism for the reaction catalyzed by dTDP-glucose 4,6-dehydratase (4,6-dehydratase) has been determined by rapid mix-chemical quench mass spectrometry. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) was employed to analyze quenched samples. The results were compatible with the postulated reaction mechanism, in which NAD(+) initially oxidizes glucosyl C4 of dTDP-glucose to NADH and dTDP-4-ketoglucose. Next, water is eliminated between C5 and C6 of dTDP-4-ketoglucose to form dTDP-4-ketoglucose-5,6-ene. Hydride transfer from NADH to C6 of dTDP-4-ketoglucose-5,6-ene regenerates NAD(+) and produces the product dTDP-4-keto-6-deoxyglucose. The single-turnover reaction was quenched at various times on the millisecond scale with a mixture of 6 M guanidine hydrochloride and sodium borohydride, which stopped the reaction and reductively stabilized the intermediates and product. Quantitative MALDI-TOF MS analysis of the quenched samples allowed the simultaneous observation of the disappearance of substrate, transient appearance and disappearance of dTDP-hexopyranose-5,6-ene (the reductively stabilized dTDP-4-ketoglucose-5,6-ene), and the appearance of product. Kinetic modeling of the process allowed rate constants for most of the steps of the reaction of dTDP-glucose-d(7) to be evaluated. The transient formation and reaction of dTDP-4-ketoglucose could not be observed, because this intermediate did not accumulate to detectable concentrations.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Borohydrides / chemistry
  • Catalysis
  • Deuterium / chemistry
  • Enzyme Stability
  • Escherichia coli / enzymology
  • Glucose / analogs & derivatives*
  • Glucose / chemistry
  • Hydro-Lyases / chemistry*
  • Kinetics
  • Oxidation-Reduction
  • Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / methods
  • Spectrophotometry / methods
  • Structure-Activity Relationship
  • Substrate Specificity
  • Thymine Nucleotides / chemistry

Substances

  • Borohydrides
  • Thymine Nucleotides
  • dTDP-6-deoxy-4-ketoglucose
  • deoxythymidine diphosphate-glucose
  • sodium borohydride
  • Deuterium
  • Hydro-Lyases
  • dTDPglucose 4,6-dehydratase
  • Glucose