Ion binding affinity in the cavity of the KcsA potassium channel

Biochemistry. 2004 May 4;43(17):4978-82. doi: 10.1021/bi049876z.

Abstract

The hydrophobic cell membrane interior presents a large energy barrier for ions to permeate. Potassium channels reduce this barrier by creating a water-filled cavity at the middle of their ion conduction pore to allow ion hydration and by directing the C-terminal "end charge" of four alpha-helices toward the water-filled cavity. Here we have studied the interaction of monovalent cations with the cavity of the KcsA K(+) channel using X-ray crystallography. In these studies, Tl(+) was used as an analogue for K(+) and the total ion-stabilization energy for Tl(+) in the cavity was estimated by measuring its binding affinity. Binding affinity for the Na(+) ion was also measured, revealing a weak selectivity ( approximately 7-fold) favoring Tl(+) over Na(+). The structures of the cavity containing Na(+), K(+), Tl(+), Rb(+), and Cs(+) are compared. These results are consistent with a fairly large (more negative than -100 mV) electrostatic potential inside the cavity, and they also imply the presence of a weak nonelectrostatic component to a cation's interaction with the cavity.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Cell Membrane / chemistry
  • Cesium / metabolism
  • Crystallography, X-Ray
  • Fourier Analysis
  • Hydrophobic and Hydrophilic Interactions
  • Ions / metabolism*
  • Osmolar Concentration
  • Potassium / metabolism
  • Potassium Channels, Inwardly Rectifying / chemistry
  • Potassium Channels, Inwardly Rectifying / metabolism*
  • Protein Structure, Secondary
  • Rubidium / metabolism
  • Sodium / metabolism
  • Static Electricity
  • Thallium / metabolism

Substances

  • Ions
  • Potassium Channels, Inwardly Rectifying
  • Cesium
  • Sodium
  • Thallium
  • Rubidium
  • Potassium