Proposal of a new binding orientation for non-peptide AT1 antagonists: homology modeling, docking and three-dimensional quantitative structure-activity relationship analysis

J Med Chem. 2006 Jul 13;49(14):4305-16. doi: 10.1021/jm060338p.

Abstract

A three-dimensional model of the AT1 receptor was constructed by means of a homology modeling procedure, using the X-ray structure of bovine rhodopsin as the initial template and taking into account the available site-directed mutagenesis data. The docking of losartan and its active metabolite EXP3174, followed by 1 ns of molecular dynamics (MD) simulation inserted into the phospholipid bilayer, suggested a different binding orientation for these antagonists from those previously proposed. Furthermore, the docking of several non-peptide antagonists was used as an alignment tool for the development of a three-dimensional quantitative structure-activity relationship (3D-QSAR) model, and the good results confirmed our binding hypothesis and the reliability of the model.

MeSH terms

  • Amino Acid Sequence
  • Angiotensin II Type 1 Receptor Blockers / chemical synthesis*
  • Angiotensin II Type 1 Receptor Blockers / chemistry
  • Animals
  • Cattle
  • Crystallography, X-Ray
  • Imidazoles / chemistry
  • Lipid Bilayers / chemistry
  • Losartan / chemistry
  • Models, Molecular*
  • Molecular Sequence Data
  • Mutation
  • Phospholipids / chemistry
  • Quantitative Structure-Activity Relationship*
  • Receptor, Angiotensin, Type 1 / chemistry*
  • Receptor, Angiotensin, Type 1 / genetics
  • Rhodopsin / chemistry
  • Sequence Homology, Amino Acid
  • Tetrazoles / chemistry

Substances

  • Angiotensin II Type 1 Receptor Blockers
  • Imidazoles
  • Lipid Bilayers
  • Phospholipids
  • Receptor, Angiotensin, Type 1
  • Tetrazoles
  • Rhodopsin
  • losartan carboxylic acid
  • Losartan