Determination of eukaryotic peptidyltransferase activity by pseudo-first-order kinetic analysis

Anal Biochem. 1997 Apr 5;247(1):115-22. doi: 10.1006/abio.1997.2034.

Abstract

We have developed an in vitro system for the determination of peptidyltransferase activity in rabbit reticulocyte ribosomes. Using this system, a detailed kinetic analysis of a model reaction for peptidyltransferase is described, with AcPhe-tRNA as the peptidyl donor and puromycin as the acceptor. The [AcPhe-tRNA-poly(U)-80S ribosome] complex (complex C) is isolated and then reacted with excess puromycin to give AcPhe-puromycin. This reaction (puromycin reaction) follows first-order kinetics at all concentrations of puromycin tested. At saturating concentrations of puromycin, the first-order rate (k3) constant is identical to the catalytic rate constant (kcat) of peptidyltransferase. This k3 of peptidyltransferase is equal to 2.9 min-1 at 37 degrees C. Moreover, the ratio k3/ Ks, which is an accurate measure of peptidyltransferase activity, was increased 80-fold when salt-washed ribosomes were replaced by unwashed ribosomes. Finally, the puromycin reaction was inhibited by several well-known antibiotics acting on the eukaryotic peptidyltransferase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Anti-Bacterial Agents
  • Cell-Free System
  • Centrifugation, Density Gradient
  • Chromatography, Gel
  • In Vitro Techniques
  • Kinetics
  • Models, Biological
  • Peptidyl Transferases / analysis*
  • Peptidyl Transferases / blood
  • Peptidyl Transferases / metabolism*
  • Poly U
  • Protein Synthesis Inhibitors
  • Puromycin
  • RNA, Transfer, Amino Acyl
  • Rabbits
  • Reticulocytes / enzymology
  • Ribosomes / enzymology
  • Solutions

Substances

  • Anti-Bacterial Agents
  • Protein Synthesis Inhibitors
  • RNA, Transfer, Amino Acyl
  • Solutions
  • tRNA, N-acetylphenylalanine-
  • Poly U
  • Puromycin
  • Peptidyl Transferases