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Research ArticleArticle

Inhibition of Peroxidase Activity of Cytochrome c: De Novo Compound Discovery and Validation

Ahmet Bakan, Alexandr A. Kapralov, Hulya Bayir, Feizhou Hu, Valerian E. Kagan and Ivet Bahar
Molecular Pharmacology September 2015, 88 (3) 421-427; DOI: https://doi.org/10.1124/mol.115.097816
Ahmet Bakan
Department of Computational and Systems Biology, School of Medicine (A.B., F.H., I.B.), and Department of Environmental and Occupational Health (A.A.K., H.B., V.E.K.), University of Pittsburgh, Pittsburgh, Pennsylvania
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Alexandr A. Kapralov
Department of Computational and Systems Biology, School of Medicine (A.B., F.H., I.B.), and Department of Environmental and Occupational Health (A.A.K., H.B., V.E.K.), University of Pittsburgh, Pittsburgh, Pennsylvania
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Hulya Bayir
Department of Computational and Systems Biology, School of Medicine (A.B., F.H., I.B.), and Department of Environmental and Occupational Health (A.A.K., H.B., V.E.K.), University of Pittsburgh, Pittsburgh, Pennsylvania
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Feizhou Hu
Department of Computational and Systems Biology, School of Medicine (A.B., F.H., I.B.), and Department of Environmental and Occupational Health (A.A.K., H.B., V.E.K.), University of Pittsburgh, Pittsburgh, Pennsylvania
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Valerian E. Kagan
Department of Computational and Systems Biology, School of Medicine (A.B., F.H., I.B.), and Department of Environmental and Occupational Health (A.A.K., H.B., V.E.K.), University of Pittsburgh, Pittsburgh, Pennsylvania
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Ivet Bahar
Department of Computational and Systems Biology, School of Medicine (A.B., F.H., I.B.), and Department of Environmental and Occupational Health (A.A.K., H.B., V.E.K.), University of Pittsburgh, Pittsburgh, Pennsylvania
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Abstract

Cytochrome c (cyt c) release from mitochondria is accepted to be the point of no return for eliciting a cascade of interactions that lead to apoptosis. A strategy for containing sustained apoptosis is to reduce the mitochondrial permeability pore opening. Pore opening is enhanced by peroxidase activity of cyt c gained upon its complexation with cardiolipin in the presence of reactive oxygen species. Blocking access to the heme group has been proposed as an effective intervention method for reducing, if not eliminating, the peroxidase activity of cyt c. In the present study, using a combination of druggability simulations, pharmacophore modeling, virtual screening, and in vitro fluorescence measurements to probe peroxidase activity, we identified three repurposable drugs and seven compounds that are validated to effectively inhibit the peroxidase activity of cyt c.

Footnotes

    • Received January 16, 2015.
    • Accepted June 15, 2015.
  • This work was supported by the National Institutes of Health Institute of General Medical Sciences [Grant 5R01-GM099738-03 to I.B.] and Institute of Allergy and Infectious Diseases [Grant 5U1-9AI068021 to V.E.K., H.B., and I.B.]. A fellowship from Tsinghua University is acknowledged by F.H.

  • dx.doi.org/10.1124/mol.115.097816.

  • ↵Embedded ImageThis article has supplemental material available at molpharm.aspetjournals.org.

  • Copyright © 2015 by The American Society for Pharmacology and Experimental Therapeutics
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Molecular Pharmacology: 88 (3)
Molecular Pharmacology
Vol. 88, Issue 3
1 Sep 2015
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Research ArticleArticle

Inhibition of Cytochrome c Peroxidase Activity

Ahmet Bakan, Alexandr A. Kapralov, Hulya Bayir, Feizhou Hu, Valerian E. Kagan and Ivet Bahar
Molecular Pharmacology September 1, 2015, 88 (3) 421-427; DOI: https://doi.org/10.1124/mol.115.097816

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Research ArticleArticle

Inhibition of Cytochrome c Peroxidase Activity

Ahmet Bakan, Alexandr A. Kapralov, Hulya Bayir, Feizhou Hu, Valerian E. Kagan and Ivet Bahar
Molecular Pharmacology September 1, 2015, 88 (3) 421-427; DOI: https://doi.org/10.1124/mol.115.097816
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