Abstract
The concept of indirect or 'allosteric' interaction between topographically distinct sites, and the subsequent 1965 Monod-Wyman-Changeux (MWC) model for the conformational change mediating them, arose around 50 years ago. Many classic regulatory proteins (including haemoglobin, Asp transcarbamylase and nicotinic acetylcholine receptor) follow the central paradigm of the MWC model, which has been expanded and challenged as a result of novel technologies. Importantly, the concept of allosteric interaction has aided our understanding of human diseases and drug design.
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The author thanks S. Edelstein for helpful comments and P. Taylor and Skaggs Foundation UCSD School of Pharmacy for support.
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Glossary
- Congenital myasthenic syndrome
-
An inherited neuromuscular disorder caused by defects at the neuromuscular junction, for instance, by mutations at the level of the postsynaptic receptors. This syndrome is distinct from autoimmune myasthenia gravis.
- Induced-fit scheme
-
(also interpreted as a 'Lamarckian' mechanism). When a ligand binds to a protein site, it instructs a conformational change in the protein that is complementary to its structure and that does not exist in its absence.
- Intrinsically disordered protein
-
Often referred to as a naturally unfolded protein or disordered protein. These proteins are characterized by a lack of a stable and well-defined three-dimensional tertiary structure when the protein exists as an isolated polypeptide chain (a subunit) under physiological conditions.
- Ising model
-
A mathematical model of ferromagnetism in statistical mechanics, named after the physicist Ernst Ising. This model represents magnetic dipole moments of atomic spins arranged in a lattice, allowing each spin to interact with its neighbours and yielding sharp phase transitions, as a simplified model of a strongly cooperative change of state.
- Michaelis–Menten hyperbolic kinetics
-
The simplest and best-known models of enzyme kinetics. It involves an enzyme (E) binding to a substrate (S) to form a complex (ES), which is converted into a product (P) and E. The relation between enzyme velocity, as a function of substrate concentration, follows an hyperbolic law.
- Molecular dynamics simulations
-
A computational method to calculate the time-dependent behaviour of a molecular system. These provide detailed information on the fluctuations and conformational changes of proteins and nucleic acids.
- Normal mode computational analysis
-
A computational method that can reveal the overall change in the conformation of large proteins, without the need to calculate the specific molecular mechanism, such as the motion of specific bonds. For instance, for proteins, each amino acid is represented as a bead and all pairs of beads are connected by springs.
- Orthosteric sites
-
The principal binding sites carried by proteins, for instance, the neurotransmitter-binding sites of receptors in the brain.
- Population shift
-
A formulation, in terms of energy landscape, for proteins of the conformational selection mechanism of the Monod–Wyman–Changeux (MWC) model.
- Protomers
-
The repeated units of a symmetrical oligomeric protein.
- Quaternary structure
-
The arrangement of multiple folded protein units in a multisubunit oligomeric complex.
- Rate-equilibrium free energy analysis
-
An analysis that provides information on transition-state structures. It revealed, for instance, the temporal sequence in which the different regions of an ion channel protein move during a closed–open conformational transition.
- Selectionist model of protein regulation
-
(also interpreted as a 'Darwinian' mechanism). The ligand selectively stabilizes pre-existing conformations when it binds to the state for which it exhibits preferential affinity. That is, the variability of the conformations takes place before selection occurs.
- Sigmoidal substrate saturation kinetics
-
A classic deviation from Michaelis–Menten hyperbolic kinetics, revealing the cooperative interaction between several identical binding sites, as is the case when oxygen binds haemoglobin.
- Single-channel electrophysiology
-
This patch clamp technique affords high resolution of the detailed properties of single-ion channel currents from many cell types.
- Startle disease
-
(also known as hyperekplexia or exaggerated surprise). A neurological disorder classically characterized by pronounced startle responses to tactile or acoustic stimuli and hypertonia, and caused by genetic mutations in a number of different genes (such as the gene encoding Gly receptor).
- Temperature-jump measurements
-
A technique for measuring rapid chemical kinetics, in which the solution is rapidly heated, for example, by the output of a pulsed laser.
- The free energy landscape paradigm of protein folding
-
A statistical description of a potential surface of a protein. It assumes that folding occurs through organizing an ensemble of structures rather than through only a few uniquely defined structural intermediates.
- Wide-angle X-ray scattering measurements
-
(WAXS measurements). An X-ray-diffraction technique that is used to determine the crystalline structure of proteins.
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Changeux, JP. 50 years of allosteric interactions: the twists and turns of the models. Nat Rev Mol Cell Biol 14, 819–829 (2013). https://doi.org/10.1038/nrm3695
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DOI: https://doi.org/10.1038/nrm3695
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