User profiles for Antrix Jain

Antrix Jain

Baylor College of Medicine
Verified email at bcm.edu
Cited by 2103

The spliceosome is a therapeutic vulnerability in MYC-driven cancer

…, K Scorsone, RJ Bernardi, SO Skinner, A Jain… - Nature, 2015 - nature.com
MYC (also known as c-MYC) overexpression or hyperactivation is one of the most common
drivers of human cancer. Despite intensive study, the MYC oncogene remains recalcitrant to …

[HTML][HTML] A proteomic landscape of diffuse-type gastric cancer

…, J Xu, C Zhang, SY Jung, JM Choi, A Jain… - Nature …, 2018 - nature.com
The diffuse-type gastric cancer (DGC) is a subtype of gastric cancer with the worst prognosis
and few treatment options. Here we present a dataset from 84 DGC patients, composed of a …

[HTML][HTML] Acetylation disfavors tau phase separation

JC Ferreon, A Jain, KJ Choi, PS Tsoi… - International journal of …, 2018 - mdpi.com
Neuropathological aggregates of the intrinsically disordered microtubule-associated protein
Tau are hallmarks of Alzheimer’s disease, with decades of research devoted to studying the …

[PDF][PDF] Region-specific transcriptional control of astrocyte function oversees local circuit activities

…, B Lozzi, NAB Huerta, CCJ Lin, D Felice, A Jain… - Neuron, 2020 - cell.com
Astrocytes play essential roles in brain function by supporting synaptic connectivity and
associated circuits. How these roles are regulated by transcription factors is unknown. Moreover, …

Casein kinase 2 is linked to stress granule dynamics through phosphorylation of the stress granule nucleating protein G3BP1

LC Reineke, WC Tsai, A Jain, JT Kaelber… - … and cellular biology, 2017 - Taylor & Francis
Stress granules (SGs) are large macromolecular aggregates that contain translation initiation
complexes and mRNAs. Stress granule formation coincides with translational repression, …

[HTML][HTML] Intermittent fasting from dawn to sunset for 30 consecutive days is associated with anticancer proteomic signature and upregulates key regulatory proteins of …

AL Mindikoglu, MM Abdulsada, A Jain, JM Choi… - Journal of …, 2020 - Elsevier
Murine studies showed that disruption of circadian clock rhythmicity could lead to cancer and
metabolic syndrome. Time-restricted feeding can reset the disrupted clock rhythm, protect …

[HTML][HTML] CRISPR/Cas9 screen uncovers functional translation of cryptic lncRNA-encoded open reading frames in human cancer

…, J Hou, X Lv, Y Ding, Y Chiu, A Jain… - The Journal of …, 2023 - Am Soc Clin Investig
Emerging evidence suggests that cryptic translation within long noncoding RNAs (lncRNAs)
may produce novel proteins with important developmental/physiological functions. However…

[HTML][HTML] Intermittent fasting from dawn to sunset for four consecutive weeks induces anticancer serum proteome response and improves metabolic syndrome

AL Mindikoglu, MM Abdulsada, A Jain, PK Jalal… - Scientific reports, 2020 - nature.com
Metabolic syndrome is characterized by central obesity, insulin resistance, elevated blood
pressure, and dyslipidemia. Metabolic syndrome is a significant risk factor for several common …

DeepRescore: leveraging deep learning to improve peptide identification in immunopeptidomics

K Li, A Jain, A Malovannaya, B Wen, B Zhang - Proteomics, 2020 - Wiley Online Library
The identification of major histocompatibility complex (MHC)‐binding peptides in mass
spectrometry (MS)‐based immunopeptideomics relies largely on database search engines …

[HTML][HTML] gpGrouper: a peptide grouping algorithm for gene-centric inference and quantitation of bottom-up proteomics data

…, H Chandrasekaran, JM Choi, A Jain… - Molecular & Cellular …, 2018 - ASBMB
In quantitative mass spectrometry, the method by which peptides are grouped into proteins
can have dramatic effects on downstream analyses. Here we describe gpGrouper, an …